miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 5' -55.8 NC_005337.1 + 23008 0.69 0.701845
Target:  5'- aGCAUGCUGCgGCACuUGCgccGCGUCgAGg -3'
miRNA:   3'- -UGUGCGGUGaCGUG-ACGa--UGCAGgUC- -5'
25512 5' -55.8 NC_005337.1 + 25739 0.67 0.808477
Target:  5'- cGCGCGCC-CcGCACcgucGCgcCGUCCAGc -3'
miRNA:   3'- -UGUGCGGuGaCGUGa---CGauGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 29725 0.66 0.881503
Target:  5'- cGCACGCgCGC-GCGgUGUUGCGgcggaCCAGc -3'
miRNA:   3'- -UGUGCG-GUGaCGUgACGAUGCa----GGUC- -5'
25512 5' -55.8 NC_005337.1 + 29788 0.69 0.7322
Target:  5'- gACuguCGCCGCUGCGCgUGCUccGCGugcUCCGc -3'
miRNA:   3'- -UGu--GCGGUGACGUG-ACGA--UGC---AGGUc -5'
25512 5' -55.8 NC_005337.1 + 32327 0.75 0.378135
Target:  5'- gGCAgGCCACgugcggGCGCaGCU-CGUCCAGg -3'
miRNA:   3'- -UGUgCGGUGa-----CGUGaCGAuGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 33409 0.67 0.808477
Target:  5'- uGCGCGUCAUcgGCACgGUgagcGCGUCCAc -3'
miRNA:   3'- -UGUGCGGUGa-CGUGaCGa---UGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 34606 0.66 0.877165
Target:  5'- cGCACGCCACgggcGCGCccagccgcgcggcgaUGCcgcgcACGUCCGu -3'
miRNA:   3'- -UGUGCGGUGa---CGUG---------------ACGa----UGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 35439 0.66 0.859008
Target:  5'- cGCACGgCGCgguggGCGCgaccGCgacCGUCCAGu -3'
miRNA:   3'- -UGUGCgGUGa----CGUGa---CGau-GCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 36271 0.66 0.866727
Target:  5'- gUACGCgAUgccGCACUGC-GCGUCCu- -3'
miRNA:   3'- uGUGCGgUGa--CGUGACGaUGCAGGuc -5'
25512 5' -55.8 NC_005337.1 + 37245 0.68 0.752003
Target:  5'- aGCACGuCCACgucGCAgUUGCgguUGUCCAGg -3'
miRNA:   3'- -UGUGC-GGUGa--CGU-GACGau-GCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 38669 0.69 0.701845
Target:  5'- gACGcCGCCAUggcGCGCUGCUGCacCCGGc -3'
miRNA:   3'- -UGU-GCGGUGa--CGUGACGAUGcaGGUC- -5'
25512 5' -55.8 NC_005337.1 + 42492 0.67 0.851076
Target:  5'- cACGCGCgaGCUccugaaGCUGCggACGUCCAGc -3'
miRNA:   3'- -UGUGCGg-UGAcg----UGACGa-UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 42544 0.67 0.826073
Target:  5'- gACGCGCUGCggGCGCUGgUGCGgcugcggCUGGa -3'
miRNA:   3'- -UGUGCGGUGa-CGUGACgAUGCa------GGUC- -5'
25512 5' -55.8 NC_005337.1 + 43364 0.67 0.808477
Target:  5'- -gACGCCGCUGCGCgugUGCUucuACccCCGGg -3'
miRNA:   3'- ugUGCGGUGACGUG---ACGA---UGcaGGUC- -5'
25512 5' -55.8 NC_005337.1 + 44304 0.68 0.789289
Target:  5'- -gGCGCCGCUcccccgaGCGCgUGCUGCGgCCGc -3'
miRNA:   3'- ugUGCGGUGA-------CGUG-ACGAUGCaGGUc -5'
25512 5' -55.8 NC_005337.1 + 44940 0.67 0.80668
Target:  5'- cAUGCGCCACcuguuuaUGCACUucugcgagcaccgGCUGCGcUCCAa -3'
miRNA:   3'- -UGUGCGGUG-------ACGUGA-------------CGAUGC-AGGUc -5'
25512 5' -55.8 NC_005337.1 + 45947 0.69 0.742151
Target:  5'- cGCGCGCCg--GCGC-GCgugGCGUCCAc -3'
miRNA:   3'- -UGUGCGGugaCGUGaCGa--UGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 47966 0.68 0.780862
Target:  5'- cGCGCGCgAgUGCGgcGCggacGCGUCCAGg -3'
miRNA:   3'- -UGUGCGgUgACGUgaCGa---UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 48174 0.66 0.874228
Target:  5'- cGCGCGCgGagGCGCUGCUGCGggagCUg- -3'
miRNA:   3'- -UGUGCGgUgaCGUGACGAUGCa---GGuc -5'
25512 5' -55.8 NC_005337.1 + 48992 0.67 0.842938
Target:  5'- aGCAUGCUGgUGUuccagaaccgGgaGCUGCGUCCGGu -3'
miRNA:   3'- -UGUGCGGUgACG----------UgaCGAUGCAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.