miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 5' -55.8 NC_005337.1 + 131164 0.66 0.859008
Target:  5'- cACACGCUGCUGCuGCUGaUGCG-CgCGGa -3'
miRNA:   3'- -UGUGCGGUGACG-UGACgAUGCaG-GUC- -5'
25512 5' -55.8 NC_005337.1 + 105783 0.66 0.865965
Target:  5'- cGCGCGCCGC-GCGCcGC-GCGgccgcauccgugcUCCAGg -3'
miRNA:   3'- -UGUGCGGUGaCGUGaCGaUGC-------------AGGUC- -5'
25512 5' -55.8 NC_005337.1 + 97692 0.66 0.859008
Target:  5'- uGCACGCCGCgcugGCggACcgGCUAgGUgCGGa -3'
miRNA:   3'- -UGUGCGGUGa---CG--UGa-CGAUgCAgGUC- -5'
25512 5' -55.8 NC_005337.1 + 2802 0.66 0.859008
Target:  5'- cGCAUGUgCACUagGCGCUGCUgcaggACGUCaCGGu -3'
miRNA:   3'- -UGUGCG-GUGA--CGUGACGA-----UGCAG-GUC- -5'
25512 5' -55.8 NC_005337.1 + 91214 0.66 0.859008
Target:  5'- gGCGCGCCGCcggUGguCaGC-GCGUCCAu -3'
miRNA:   3'- -UGUGCGGUG---ACguGaCGaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 35439 0.66 0.859008
Target:  5'- cGCACGgCGCgguggGCGCgaccGCgacCGUCCAGu -3'
miRNA:   3'- -UGUGCgGUGa----CGUGa---CGau-GCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 129886 0.66 0.866727
Target:  5'- gGCAucuCGCCGCUGCACaug-GCGgCCGGg -3'
miRNA:   3'- -UGU---GCGGUGACGUGacgaUGCaGGUC- -5'
25512 5' -55.8 NC_005337.1 + 64275 0.66 0.866727
Target:  5'- gGCGCGCCGgaGCaACUGCUcuucgacCGUCUg- -3'
miRNA:   3'- -UGUGCGGUgaCG-UGACGAu------GCAGGuc -5'
25512 5' -55.8 NC_005337.1 + 60928 0.66 0.866727
Target:  5'- gGCACGCgACgcgcCACUGCcGCG-CCGGc -3'
miRNA:   3'- -UGUGCGgUGac--GUGACGaUGCaGGUC- -5'
25512 5' -55.8 NC_005337.1 + 36271 0.66 0.866727
Target:  5'- gUACGCgAUgccGCACUGC-GCGUCCu- -3'
miRNA:   3'- uGUGCGgUGa--CGUGACGaUGCAGGuc -5'
25512 5' -55.8 NC_005337.1 + 95306 0.67 0.826073
Target:  5'- gGCGCGCgGC-GCGCUGUUGCGcUCg-- -3'
miRNA:   3'- -UGUGCGgUGaCGUGACGAUGC-AGguc -5'
25512 5' -55.8 NC_005337.1 + 70875 0.67 0.842938
Target:  5'- aGCGCGCCAUguccagcGCGCU-CUGCGgcgCCAc -3'
miRNA:   3'- -UGUGCGGUGa------CGUGAcGAUGCa--GGUc -5'
25512 5' -55.8 NC_005337.1 + 6253 0.67 0.851076
Target:  5'- cUugGCCGacucguCUGCGCggaGC-ACGUCCAGc -3'
miRNA:   3'- uGugCGGU------GACGUGa--CGaUGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 118747 0.67 0.834601
Target:  5'- -gACGauGCUGCGCUGCUgcugcgcgACGUCCuAGa -3'
miRNA:   3'- ugUGCggUGACGUGACGA--------UGCAGG-UC- -5'
25512 5' -55.8 NC_005337.1 + 604 0.67 0.817363
Target:  5'- -aACGCCACgcagGCgaACUccGCgucgGCGUCCAGc -3'
miRNA:   3'- ugUGCGGUGa---CG--UGA--CGa---UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 120448 0.67 0.851076
Target:  5'- uGCGCGCCccACaugGUcCUGauCUGCGUCCGGg -3'
miRNA:   3'- -UGUGCGG--UGa--CGuGAC--GAUGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 111424 0.67 0.817363
Target:  5'- aGCGCGCCGCgguccaGCACgaGCggguCGUCCu- -3'
miRNA:   3'- -UGUGCGGUGa-----CGUGa-CGau--GCAGGuc -5'
25512 5' -55.8 NC_005337.1 + 70043 0.67 0.826073
Target:  5'- -aGCGCCGCaaagagGCGCUGCc-CGUCgCGGa -3'
miRNA:   3'- ugUGCGGUGa-----CGUGACGauGCAG-GUC- -5'
25512 5' -55.8 NC_005337.1 + 48992 0.67 0.842938
Target:  5'- aGCAUGCUGgUGUuccagaaccgGgaGCUGCGUCCGGu -3'
miRNA:   3'- -UGUGCGGUgACG----------UgaCGAUGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 95676 0.67 0.834601
Target:  5'- aGCACGCCcacGCUGCGCUcGCgccACG-CCu- -3'
miRNA:   3'- -UGUGCGG---UGACGUGA-CGa--UGCaGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.