miRNA display CGI


Results 1 - 20 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 5' -55.8 NC_005337.1 + 29725 0.66 0.881503
Target:  5'- cGCACGCgCGC-GCGgUGUUGCGgcggaCCAGc -3'
miRNA:   3'- -UGUGCG-GUGaCGUgACGAUGCa----GGUC- -5'
25512 5' -55.8 NC_005337.1 + 93746 0.66 0.88855
Target:  5'- cGCGCGCCGCgGCGgCUGC-AUG-CCGc -3'
miRNA:   3'- -UGUGCGGUGaCGU-GACGaUGCaGGUc -5'
25512 5' -55.8 NC_005337.1 + 105783 0.66 0.865965
Target:  5'- cGCGCGCCGC-GCGCcGC-GCGgccgcauccgugcUCCAGg -3'
miRNA:   3'- -UGUGCGGUGaCGUGaCGaUGC-------------AGGUC- -5'
25512 5' -55.8 NC_005337.1 + 105292 0.66 0.881503
Target:  5'- gGC-CGCCGCUGCccgcagucGCUGCgcACGccCCAGu -3'
miRNA:   3'- -UGuGCGGUGACG--------UGACGa-UGCa-GGUC- -5'
25512 5' -55.8 NC_005337.1 + 109179 0.66 0.874228
Target:  5'- cCGCGCCGCgcggGCGgaGCUcgGCGUCg-- -3'
miRNA:   3'- uGUGCGGUGa---CGUgaCGA--UGCAGguc -5'
25512 5' -55.8 NC_005337.1 + 64275 0.66 0.866727
Target:  5'- gGCGCGCCGgaGCaACUGCUcuucgacCGUCUg- -3'
miRNA:   3'- -UGUGCGGUgaCG-UGACGAu------GCAGGuc -5'
25512 5' -55.8 NC_005337.1 + 35439 0.66 0.859008
Target:  5'- cGCACGgCGCgguggGCGCgaccGCgacCGUCCAGu -3'
miRNA:   3'- -UGUGCgGUGa----CGUGa---CGau-GCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 132593 0.66 0.874228
Target:  5'- -gACGCgCGCUGCgGCUGCg--GUUCAGg -3'
miRNA:   3'- ugUGCG-GUGACG-UGACGaugCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 133147 0.66 0.881503
Target:  5'- aGCugGUCGC-GCGCgUGCUGCGgcugcucCCGGc -3'
miRNA:   3'- -UGugCGGUGaCGUG-ACGAUGCa------GGUC- -5'
25512 5' -55.8 NC_005337.1 + 60928 0.66 0.866727
Target:  5'- gGCACGCgACgcgcCACUGCcGCG-CCGGc -3'
miRNA:   3'- -UGUGCGgUGac--GUGACGaUGCaGGUC- -5'
25512 5' -55.8 NC_005337.1 + 91214 0.66 0.859008
Target:  5'- gGCGCGCCGCcggUGguCaGC-GCGUCCAu -3'
miRNA:   3'- -UGUGCGGUG---ACguGaCGaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 98839 0.66 0.874228
Target:  5'- uCGCGcCCACcGCGCcgUGC-GCGUCCAu -3'
miRNA:   3'- uGUGC-GGUGaCGUG--ACGaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 109444 0.66 0.874228
Target:  5'- cACGCGCCGCUcgaGCACgGCgaggaaGUCgCGGa -3'
miRNA:   3'- -UGUGCGGUGA---CGUGaCGaug---CAG-GUC- -5'
25512 5' -55.8 NC_005337.1 + 129886 0.66 0.866727
Target:  5'- gGCAucuCGCCGCUGCACaug-GCGgCCGGg -3'
miRNA:   3'- -UGU---GCGGUGACGUGacgaUGCaGGUC- -5'
25512 5' -55.8 NC_005337.1 + 1983 0.66 0.859008
Target:  5'- uGCACGCCGggucgGCgucaGCUGCggcuUGUCCGGg -3'
miRNA:   3'- -UGUGCGGUga---CG----UGACGau--GCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 36271 0.66 0.866727
Target:  5'- gUACGCgAUgccGCACUGC-GCGUCCu- -3'
miRNA:   3'- uGUGCGgUGa--CGUGACGaUGCAGGuc -5'
25512 5' -55.8 NC_005337.1 + 131164 0.66 0.859008
Target:  5'- cACACGCUGCUGCuGCUGaUGCG-CgCGGa -3'
miRNA:   3'- -UGUGCGGUGACG-UGACgAUGCaG-GUC- -5'
25512 5' -55.8 NC_005337.1 + 85631 0.66 0.859008
Target:  5'- -gGCGUCcaGCUGCGC-GCUgGCGUCCGc -3'
miRNA:   3'- ugUGCGG--UGACGUGaCGA-UGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 2802 0.66 0.859008
Target:  5'- cGCAUGUgCACUagGCGCUGCUgcaggACGUCaCGGu -3'
miRNA:   3'- -UGUGCG-GUGA--CGUGACGA-----UGCAG-GUC- -5'
25512 5' -55.8 NC_005337.1 + 97692 0.66 0.859008
Target:  5'- uGCACGCCGCgcugGCggACcgGCUAgGUgCGGa -3'
miRNA:   3'- -UGUGCGGUGa---CG--UGa-CGAUgCAgGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.