miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 5' -55.8 NC_005337.1 + 126976 1.07 0.003059
Target:  5'- uACACGCCACUGCACUGCUACGUCCAGc -3'
miRNA:   3'- -UGUGCGGUGACGUGACGAUGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 129781 0.79 0.230483
Target:  5'- aACACGCCGCUGCACgUGCUgGCGaUgCAGa -3'
miRNA:   3'- -UGUGCGGUGACGUG-ACGA-UGC-AgGUC- -5'
25512 5' -55.8 NC_005337.1 + 97169 0.77 0.293773
Target:  5'- -gGCGCCucgGCGCUGCUGCGcUCCGGc -3'
miRNA:   3'- ugUGCGGugaCGUGACGAUGC-AGGUC- -5'
25512 5' -55.8 NC_005337.1 + 77123 0.77 0.300798
Target:  5'- cACGCGCCggguGCUGCGCUcCacgGCGUCCAGg -3'
miRNA:   3'- -UGUGCGG----UGACGUGAcGa--UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 6254 0.75 0.369827
Target:  5'- -aGCGUCGCUGaCGCUgGCgccgGCGUCCAGg -3'
miRNA:   3'- ugUGCGGUGAC-GUGA-CGa---UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 32327 0.75 0.378135
Target:  5'- gGCAgGCCACgugcggGCGCaGCU-CGUCCAGg -3'
miRNA:   3'- -UGUgCGGUGa-----CGUGaCGAuGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 68207 0.75 0.385719
Target:  5'- -gGCGCCGCUGCGggcccgcCUGacgGCGUCCGGg -3'
miRNA:   3'- ugUGCGGUGACGU-------GACga-UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 125255 0.74 0.458293
Target:  5'- uACACGCCACUGCACguacucaugcGCUGCagccCCGGc -3'
miRNA:   3'- -UGUGCGGUGACGUGa---------CGAUGca--GGUC- -5'
25512 5' -55.8 NC_005337.1 + 128162 0.74 0.458293
Target:  5'- cGCACGCCGCUGCACgugGCcgcgACGUaCAc -3'
miRNA:   3'- -UGUGCGGUGACGUGa--CGa---UGCAgGUc -5'
25512 5' -55.8 NC_005337.1 + 127623 0.72 0.526464
Target:  5'- uGCACGCCGCUGgAucuuCUGCUcAUGUCCu- -3'
miRNA:   3'- -UGUGCGGUGACgU----GACGA-UGCAGGuc -5'
25512 5' -55.8 NC_005337.1 + 10639 0.72 0.526464
Target:  5'- uCGCGCCGCUGCAgaGCUccacgaGCGUCa-- -3'
miRNA:   3'- uGUGCGGUGACGUgaCGA------UGCAGguc -5'
25512 5' -55.8 NC_005337.1 + 121729 0.72 0.546661
Target:  5'- -gACGCCGCUGCACgUGCacuCGgCCAGc -3'
miRNA:   3'- ugUGCGGUGACGUG-ACGau-GCaGGUC- -5'
25512 5' -55.8 NC_005337.1 + 121503 0.72 0.556852
Target:  5'- uCACGCCGCUGCACauguacaucUGCUACG--CGGa -3'
miRNA:   3'- uGUGCGGUGACGUG---------ACGAUGCagGUC- -5'
25512 5' -55.8 NC_005337.1 + 132472 0.72 0.556852
Target:  5'- aACACGCCGCUGCACUccaugGCcACGauuUCCu- -3'
miRNA:   3'- -UGUGCGGUGACGUGA-----CGaUGC---AGGuc -5'
25512 5' -55.8 NC_005337.1 + 132514 0.72 0.556852
Target:  5'- aACACGCUGCUGCA--GCccuuCGUCCGGg -3'
miRNA:   3'- -UGUGCGGUGACGUgaCGau--GCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 120967 0.72 0.567098
Target:  5'- cCACGgguaCCACcgGCACUGCUugGgUCCGGc -3'
miRNA:   3'- uGUGC----GGUGa-CGUGACGAugC-AGGUC- -5'
25512 5' -55.8 NC_005337.1 + 8893 0.72 0.567098
Target:  5'- cCGCGCCACagGCGCgGCcGCGUCUAc -3'
miRNA:   3'- uGUGCGGUGa-CGUGaCGaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 129521 0.72 0.577391
Target:  5'- gACGCGCUGCUcGCGCgcgGCgcgaGCGUCCGu -3'
miRNA:   3'- -UGUGCGGUGA-CGUGa--CGa---UGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 71278 0.71 0.587725
Target:  5'- cAUGCGCCGCgugGCGCUGgUGCGcuUCCGc -3'
miRNA:   3'- -UGUGCGGUGa--CGUGACgAUGC--AGGUc -5'
25512 5' -55.8 NC_005337.1 + 2359 0.71 0.618896
Target:  5'- aGCGCGCCGCaGCACcgGUcgaccGCGUCCAc -3'
miRNA:   3'- -UGUGCGGUGaCGUGa-CGa----UGCAGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.