miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 5' -55.8 NC_005337.1 + 604 0.67 0.817363
Target:  5'- -aACGCCACgcagGCgaACUccGCgucgGCGUCCAGc -3'
miRNA:   3'- ugUGCGGUGa---CG--UGA--CGa---UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 604 0.67 0.817363
Target:  5'- -aACGCCACgcagGCgaACUccGCgucgGCGUCCAGc -3'
miRNA:   3'- ugUGCGGUGa---CG--UGA--CGa---UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 1983 0.66 0.859008
Target:  5'- uGCACGCCGggucgGCgucaGCUGCggcuUGUCCGGg -3'
miRNA:   3'- -UGUGCGGUga---CG----UGACGau--GCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 2359 0.71 0.618896
Target:  5'- aGCGCGCCGCaGCACcgGUcgaccGCGUCCAc -3'
miRNA:   3'- -UGUGCGGUGaCGUGa-CGa----UGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 2802 0.66 0.859008
Target:  5'- cGCAUGUgCACUagGCGCUGCUgcaggACGUCaCGGu -3'
miRNA:   3'- -UGUGCG-GUGA--CGUGACGA-----UGCAG-GUC- -5'
25512 5' -55.8 NC_005337.1 + 3317 0.7 0.639741
Target:  5'- cGCACGuCCACgGcCAC-GCcgGCGUCCAGg -3'
miRNA:   3'- -UGUGC-GGUGaC-GUGaCGa-UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 4586 0.67 0.851076
Target:  5'- gGCGCgGCgACUGCGCgUGCUG-GUgCAGg -3'
miRNA:   3'- -UGUG-CGgUGACGUG-ACGAUgCAgGUC- -5'
25512 5' -55.8 NC_005337.1 + 5059 0.7 0.660562
Target:  5'- uCGCGCCACaGCAgcgcuCUGggGCGUCCAc -3'
miRNA:   3'- uGUGCGGUGaCGU-----GACgaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 5966 0.66 0.881503
Target:  5'- uCGCGCCGC-GCGCgaGCagACGggCCAGg -3'
miRNA:   3'- uGUGCGGUGaCGUGa-CGa-UGCa-GGUC- -5'
25512 5' -55.8 NC_005337.1 + 6253 0.67 0.851076
Target:  5'- cUugGCCGacucguCUGCGCggaGC-ACGUCCAGc -3'
miRNA:   3'- uGugCGGU------GACGUGa--CGaUGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 6254 0.75 0.369827
Target:  5'- -aGCGUCGCUGaCGCUgGCgccgGCGUCCAGg -3'
miRNA:   3'- ugUGCGGUGAC-GUGA-CGa---UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 6567 0.68 0.780862
Target:  5'- -gACGCCA--GCGCUGCgcgGUCCGGa -3'
miRNA:   3'- ugUGCGGUgaCGUGACGaugCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 6673 0.67 0.851076
Target:  5'- uGCAC-CCACaGCACgacucgGCgACGUCCAc -3'
miRNA:   3'- -UGUGcGGUGaCGUGa-----CGaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 8893 0.72 0.567098
Target:  5'- cCGCGCCACagGCGCgGCcGCGUCUAc -3'
miRNA:   3'- uGUGCGGUGa-CGUGaCGaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 9305 0.7 0.666793
Target:  5'- aGCugGCgGCgaacGCACggacgacagccgaGCUGCGUCCGGa -3'
miRNA:   3'- -UGugCGgUGa---CGUGa------------CGAUGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 9353 0.66 0.881503
Target:  5'- gACGCGUCGCcuggacgcGCGCUGC-GCGUUCGa -3'
miRNA:   3'- -UGUGCGGUGa-------CGUGACGaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 10639 0.72 0.526464
Target:  5'- uCGCGCCGCUGCAgaGCUccacgaGCGUCa-- -3'
miRNA:   3'- uGUGCGGUGACGUgaCGA------UGCAGguc -5'
25512 5' -55.8 NC_005337.1 + 11673 0.68 0.799426
Target:  5'- aACACGCCGCcGC-CcGCgugGUCCAGg -3'
miRNA:   3'- -UGUGCGGUGaCGuGaCGaugCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 15338 0.67 0.808477
Target:  5'- cGCgACGCaCGCUGCGCccGCgcgACGcuUCCAGg -3'
miRNA:   3'- -UG-UGCG-GUGACGUGa-CGa--UGC--AGGUC- -5'
25512 5' -55.8 NC_005337.1 + 18476 0.7 0.660562
Target:  5'- cGCGCGCCAUguccaGCACcg--GCGUCCAGc -3'
miRNA:   3'- -UGUGCGGUGa----CGUGacgaUGCAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.