miRNA display CGI


Results 1 - 20 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 5' -55.8 NC_005337.1 + 133147 0.66 0.881503
Target:  5'- aGCugGUCGC-GCGCgUGCUGCGgcugcucCCGGc -3'
miRNA:   3'- -UGugCGGUGaCGUG-ACGAUGCa------GGUC- -5'
25512 5' -55.8 NC_005337.1 + 133147 0.66 0.881503
Target:  5'- aGCugGUCGC-GCGCgUGCUGCGgcugcucCCGGc -3'
miRNA:   3'- -UGugCGGUGaCGUG-ACGAUGCa------GGUC- -5'
25512 5' -55.8 NC_005337.1 + 132593 0.66 0.874228
Target:  5'- -gACGCgCGCUGCgGCUGCg--GUUCAGg -3'
miRNA:   3'- ugUGCG-GUGACG-UGACGaugCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 132514 0.72 0.556852
Target:  5'- aACACGCUGCUGCA--GCccuuCGUCCGGg -3'
miRNA:   3'- -UGUGCGGUGACGUgaCGau--GCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 132472 0.72 0.556852
Target:  5'- aACACGCCGCUGCACUccaugGCcACGauuUCCu- -3'
miRNA:   3'- -UGUGCGGUGACGUGA-----CGaUGC---AGGuc -5'
25512 5' -55.8 NC_005337.1 + 132194 0.68 0.790218
Target:  5'- cGCGCGCCGacaccgUGCgccuGCUGCUGCGgcaCGGg -3'
miRNA:   3'- -UGUGCGGUg-----ACG----UGACGAUGCag-GUC- -5'
25512 5' -55.8 NC_005337.1 + 132159 0.67 0.851076
Target:  5'- -aACGCCGCUGCAC-GCgUGCcugaCCGGg -3'
miRNA:   3'- ugUGCGGUGACGUGaCG-AUGca--GGUC- -5'
25512 5' -55.8 NC_005337.1 + 131164 0.66 0.859008
Target:  5'- cACACGCUGCUGCuGCUGaUGCG-CgCGGa -3'
miRNA:   3'- -UGUGCGGUGACG-UGACgAUGCaG-GUC- -5'
25512 5' -55.8 NC_005337.1 + 130890 0.69 0.722159
Target:  5'- aACACGCCGCUGCACcucaugGCcGCGcacaccUCCu- -3'
miRNA:   3'- -UGUGCGGUGACGUGa-----CGaUGC------AGGuc -5'
25512 5' -55.8 NC_005337.1 + 130788 0.68 0.780862
Target:  5'- gGCGcCGCCGgUGCgGCUGCUGCGcuucUUCGGc -3'
miRNA:   3'- -UGU-GCGGUgACG-UGACGAUGC----AGGUC- -5'
25512 5' -55.8 NC_005337.1 + 130682 0.7 0.650159
Target:  5'- cUACGCCGCUggggGCGCUGCUcaagucccCGUCCGc -3'
miRNA:   3'- uGUGCGGUGA----CGUGACGAu-------GCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 129922 0.68 0.799426
Target:  5'- aACAcCGCCGcCUGCGaaaaGCUcauCGUCCAGg -3'
miRNA:   3'- -UGU-GCGGU-GACGUga--CGAu--GCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 129886 0.66 0.866727
Target:  5'- gGCAucuCGCCGCUGCACaug-GCGgCCGGg -3'
miRNA:   3'- -UGU---GCGGUGACGUGacgaUGCaGGUC- -5'
25512 5' -55.8 NC_005337.1 + 129781 0.79 0.230483
Target:  5'- aACACGCCGCUGCACgUGCUgGCGaUgCAGa -3'
miRNA:   3'- -UGUGCGGUGACGUG-ACGA-UGC-AgGUC- -5'
25512 5' -55.8 NC_005337.1 + 129521 0.72 0.577391
Target:  5'- gACGCGCUGCUcGCGCgcgGCgcgaGCGUCCGu -3'
miRNA:   3'- -UGUGCGGUGA-CGUGa--CGa---UGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 128864 0.69 0.7322
Target:  5'- cCACgGCCgaACUGCgcaGCUGCUGCGcacCCAGa -3'
miRNA:   3'- uGUG-CGG--UGACG---UGACGAUGCa--GGUC- -5'
25512 5' -55.8 NC_005337.1 + 128269 0.67 0.808477
Target:  5'- -gACGCCGCUGCACgcgGCg--GUCUg- -3'
miRNA:   3'- ugUGCGGUGACGUGa--CGaugCAGGuc -5'
25512 5' -55.8 NC_005337.1 + 128162 0.74 0.458293
Target:  5'- cGCACGCCGCUGCACgugGCcgcgACGUaCAc -3'
miRNA:   3'- -UGUGCGGUGACGUGa--CGa---UGCAgGUc -5'
25512 5' -55.8 NC_005337.1 + 128155 0.7 0.639741
Target:  5'- aGCAUGUCGCcGgGCUGCUGUGUCCGu -3'
miRNA:   3'- -UGUGCGGUGaCgUGACGAUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 127970 0.68 0.761745
Target:  5'- cCGCGCCAUgcgcgaggUGCGCUGCaACG-CCGa -3'
miRNA:   3'- uGUGCGGUG--------ACGUGACGaUGCaGGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.