miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 5' -55.8 NC_005337.1 + 125980 0.71 0.628275
Target:  5'- aACGCGCgGCUGCagaccccGCUGC-ACGUCgCGGc -3'
miRNA:   3'- -UGUGCGgUGACG-------UGACGaUGCAG-GUC- -5'
25512 5' -55.8 NC_005337.1 + 3317 0.7 0.639741
Target:  5'- cGCACGuCCACgGcCAC-GCcgGCGUCCAGg -3'
miRNA:   3'- -UGUGC-GGUGaC-GUGaCGa-UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 128155 0.7 0.639741
Target:  5'- aGCAUGUCGCcGgGCUGCUGUGUCCGu -3'
miRNA:   3'- -UGUGCGGUGaCgUGACGAUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 130682 0.7 0.650159
Target:  5'- cUACGCCGCUggggGCGCUGCUcaagucccCGUCCGc -3'
miRNA:   3'- uGUGCGGUGA----CGUGACGAu-------GCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 5059 0.7 0.660562
Target:  5'- uCGCGCCACaGCAgcgcuCUGggGCGUCCAc -3'
miRNA:   3'- uGUGCGGUGaCGU-----GACgaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 18476 0.7 0.660562
Target:  5'- cGCGCGCCAUguccaGCACcg--GCGUCCAGc -3'
miRNA:   3'- -UGUGCGGUGa----CGUGacgaUGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 70362 0.7 0.660562
Target:  5'- -uGCGCCGCcGCACgugGUcGCGUCCGu -3'
miRNA:   3'- ugUGCGGUGaCGUGa--CGaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 9305 0.7 0.666793
Target:  5'- aGCugGCgGCgaacGCACggacgacagccgaGCUGCGUCCGGa -3'
miRNA:   3'- -UGugCGgUGa---CGUGa------------CGAUGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 127411 0.7 0.690564
Target:  5'- cGCACGCUGCUGCACcaccuggcgaccgUGCcGCGggCCAa -3'
miRNA:   3'- -UGUGCGGUGACGUG-------------ACGaUGCa-GGUc -5'
25512 5' -55.8 NC_005337.1 + 70253 0.7 0.691592
Target:  5'- cUACGCCAC-GCGCUGC-GCGcugugCCGGa -3'
miRNA:   3'- uGUGCGGUGaCGUGACGaUGCa----GGUC- -5'
25512 5' -55.8 NC_005337.1 + 122044 0.7 0.691592
Target:  5'- aACACGCCGCUGCACaGCcugg-CCAc -3'
miRNA:   3'- -UGUGCGGUGACGUGaCGaugcaGGUc -5'
25512 5' -55.8 NC_005337.1 + 53855 0.69 0.698775
Target:  5'- uGCGCGCCGCggacgGCucCUGCUgguucugcaagcagGCGUCgGGg -3'
miRNA:   3'- -UGUGCGGUGa----CGu-GACGA--------------UGCAGgUC- -5'
25512 5' -55.8 NC_005337.1 + 23008 0.69 0.701845
Target:  5'- aGCAUGCUGCgGCACuUGCgccGCGUCgAGg -3'
miRNA:   3'- -UGUGCGGUGaCGUG-ACGa--UGCAGgUC- -5'
25512 5' -55.8 NC_005337.1 + 38669 0.69 0.701845
Target:  5'- gACGcCGCCAUggcGCGCUGCUGCacCCGGc -3'
miRNA:   3'- -UGU-GCGGUGa--CGUGACGAUGcaGGUC- -5'
25512 5' -55.8 NC_005337.1 + 77840 0.69 0.701845
Target:  5'- cGCGCGuCCAC-GCGCUGCUGCccguagguGcCCAGc -3'
miRNA:   3'- -UGUGC-GGUGaCGUGACGAUG--------CaGGUC- -5'
25512 5' -55.8 NC_005337.1 + 83052 0.69 0.712037
Target:  5'- aGCAUGCUGCUGgGCgugUGC-ACGUCCAc -3'
miRNA:   3'- -UGUGCGGUGACgUG---ACGaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 130890 0.69 0.722159
Target:  5'- aACACGCCGCUGCACcucaugGCcGCGcacaccUCCu- -3'
miRNA:   3'- -UGUGCGGUGACGUGa-----CGaUGC------AGGuc -5'
25512 5' -55.8 NC_005337.1 + 110081 0.69 0.722159
Target:  5'- cGCGCGCCucgccgguaACgGCGCgagGCUgcGCGUCCAu -3'
miRNA:   3'- -UGUGCGG---------UGaCGUGa--CGA--UGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 29788 0.69 0.7322
Target:  5'- gACuguCGCCGCUGCGCgUGCUccGCGugcUCCGc -3'
miRNA:   3'- -UGu--GCGGUGACGUG-ACGA--UGC---AGGUc -5'
25512 5' -55.8 NC_005337.1 + 128864 0.69 0.7322
Target:  5'- cCACgGCCgaACUGCgcaGCUGCUGCGcacCCAGa -3'
miRNA:   3'- uGUG-CGG--UGACG---UGACGAUGCa--GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.