Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25512 | 5' | -55.8 | NC_005337.1 | + | 126976 | 1.07 | 0.003059 |
Target: 5'- uACACGCCACUGCACUGCUACGUCCAGc -3' miRNA: 3'- -UGUGCGGUGACGUGACGAUGCAGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 129781 | 0.79 | 0.230483 |
Target: 5'- aACACGCCGCUGCACgUGCUgGCGaUgCAGa -3' miRNA: 3'- -UGUGCGGUGACGUG-ACGA-UGC-AgGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 77123 | 0.77 | 0.300798 |
Target: 5'- cACGCGCCggguGCUGCGCUcCacgGCGUCCAGg -3' miRNA: 3'- -UGUGCGG----UGACGUGAcGa--UGCAGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 97169 | 0.77 | 0.293773 |
Target: 5'- -gGCGCCucgGCGCUGCUGCGcUCCGGc -3' miRNA: 3'- ugUGCGGugaCGUGACGAUGC-AGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 6254 | 0.75 | 0.369827 |
Target: 5'- -aGCGUCGCUGaCGCUgGCgccgGCGUCCAGg -3' miRNA: 3'- ugUGCGGUGAC-GUGA-CGa---UGCAGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 68207 | 0.75 | 0.385719 |
Target: 5'- -gGCGCCGCUGCGggcccgcCUGacgGCGUCCGGg -3' miRNA: 3'- ugUGCGGUGACGU-------GACga-UGCAGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 32327 | 0.75 | 0.378135 |
Target: 5'- gGCAgGCCACgugcggGCGCaGCU-CGUCCAGg -3' miRNA: 3'- -UGUgCGGUGa-----CGUGaCGAuGCAGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 125255 | 0.74 | 0.458293 |
Target: 5'- uACACGCCACUGCACguacucaugcGCUGCagccCCGGc -3' miRNA: 3'- -UGUGCGGUGACGUGa---------CGAUGca--GGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 128162 | 0.74 | 0.458293 |
Target: 5'- cGCACGCCGCUGCACgugGCcgcgACGUaCAc -3' miRNA: 3'- -UGUGCGGUGACGUGa--CGa---UGCAgGUc -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 132472 | 0.72 | 0.556852 |
Target: 5'- aACACGCCGCUGCACUccaugGCcACGauuUCCu- -3' miRNA: 3'- -UGUGCGGUGACGUGA-----CGaUGC---AGGuc -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 10639 | 0.72 | 0.526464 |
Target: 5'- uCGCGCCGCUGCAgaGCUccacgaGCGUCa-- -3' miRNA: 3'- uGUGCGGUGACGUgaCGA------UGCAGguc -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 132514 | 0.72 | 0.556852 |
Target: 5'- aACACGCUGCUGCA--GCccuuCGUCCGGg -3' miRNA: 3'- -UGUGCGGUGACGUgaCGau--GCAGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 120967 | 0.72 | 0.567098 |
Target: 5'- cCACGgguaCCACcgGCACUGCUugGgUCCGGc -3' miRNA: 3'- uGUGC----GGUGa-CGUGACGAugC-AGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 129521 | 0.72 | 0.577391 |
Target: 5'- gACGCGCUGCUcGCGCgcgGCgcgaGCGUCCGu -3' miRNA: 3'- -UGUGCGGUGA-CGUGa--CGa---UGCAGGUc -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 121503 | 0.72 | 0.556852 |
Target: 5'- uCACGCCGCUGCACauguacaucUGCUACG--CGGa -3' miRNA: 3'- uGUGCGGUGACGUG---------ACGAUGCagGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 121729 | 0.72 | 0.546661 |
Target: 5'- -gACGCCGCUGCACgUGCacuCGgCCAGc -3' miRNA: 3'- ugUGCGGUGACGUG-ACGau-GCaGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 127623 | 0.72 | 0.526464 |
Target: 5'- uGCACGCCGCUGgAucuuCUGCUcAUGUCCu- -3' miRNA: 3'- -UGUGCGGUGACgU----GACGA-UGCAGGuc -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 8893 | 0.72 | 0.567098 |
Target: 5'- cCGCGCCACagGCGCgGCcGCGUCUAc -3' miRNA: 3'- uGUGCGGUGa-CGUGaCGaUGCAGGUc -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 2359 | 0.71 | 0.618896 |
Target: 5'- aGCGCGCCGCaGCACcgGUcgaccGCGUCCAc -3' miRNA: 3'- -UGUGCGGUGaCGUGa-CGa----UGCAGGUc -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 125980 | 0.71 | 0.628275 |
Target: 5'- aACGCGCgGCUGCagaccccGCUGC-ACGUCgCGGc -3' miRNA: 3'- -UGUGCGgUGACG-------UGACGaUGCAG-GUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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