miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25513 5' -61.5 NC_005337.1 + 122566 0.67 0.54403
Target:  5'- cUGCUCcaGCCGaGGgugaaCCGGCUgcucuGCCGGUUUg -3'
miRNA:   3'- -ACGAG--CGGC-CUa----GGCCGA-----UGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 59764 0.67 0.542086
Target:  5'- aGCUCGgUGGAcaaaaaggacagCCGGC-GCCGGCa- -3'
miRNA:   3'- aCGAGCgGCCUa-----------GGCCGaUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 83250 0.67 0.534337
Target:  5'- cUGCUggaGCCGGAgCCuGaCUGgCGGCUCg -3'
miRNA:   3'- -ACGAg--CGGCCUaGGcC-GAUgGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 97691 0.67 0.534337
Target:  5'- cUGCaCGCCGcg-CUGGCggACCGGCUa -3'
miRNA:   3'- -ACGaGCGGCcuaGGCCGa-UGGCCGAg -5'
25513 5' -61.5 NC_005337.1 + 88734 0.68 0.524706
Target:  5'- gGCggCGCCGacUCCaGC-ACCGGCUCc -3'
miRNA:   3'- aCGa-GCGGCcuAGGcCGaUGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 85930 0.68 0.524706
Target:  5'- cGCg-GCCuGGuucaCCGGCgcCCGGCUCa -3'
miRNA:   3'- aCGagCGG-CCua--GGCCGauGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 59557 0.68 0.524706
Target:  5'- cGCUCGUCGaugcgcaucuGGUCgCGGCggaUGCCGGuCUCc -3'
miRNA:   3'- aCGAGCGGC----------CUAG-GCCG---AUGGCC-GAG- -5'
25513 5' -61.5 NC_005337.1 + 83049 0.68 0.524706
Target:  5'- aGCUcCGaCCGGucccugcUCCGGauccccaGCCGGCUCa -3'
miRNA:   3'- aCGA-GC-GGCCu------AGGCCga-----UGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 43336 0.68 0.515141
Target:  5'- gGCUCGCCGacGcgCUGGCcGCCGGg-- -3'
miRNA:   3'- aCGAGCGGC--CuaGGCCGaUGGCCgag -5'
25513 5' -61.5 NC_005337.1 + 57026 0.68 0.515141
Target:  5'- cGC-CgGCUGGAcgUCCGGCUGCUgGGCg- -3'
miRNA:   3'- aCGaG-CGGCCU--AGGCCGAUGG-CCGag -5'
25513 5' -61.5 NC_005337.1 + 95503 0.68 0.505648
Target:  5'- gGCgCGUCGGGcuccaCCGcGC-ACCGGCUCg -3'
miRNA:   3'- aCGaGCGGCCUa----GGC-CGaUGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 49567 0.68 0.486894
Target:  5'- aGCUcguuguccagCGCCGGGUCCGuGggAUCGGCg- -3'
miRNA:   3'- aCGA----------GCGGCCUAGGC-CgaUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 44521 0.68 0.477641
Target:  5'- cGCUCGCggCGGAgcuccUCGGCUACCGcGUg- -3'
miRNA:   3'- aCGAGCG--GCCUa----GGCCGAUGGC-CGag -5'
25513 5' -61.5 NC_005337.1 + 6392 0.68 0.477641
Target:  5'- cGCUCGCCGGcgCCGcGCgccaccagACUGuGCa- -3'
miRNA:   3'- aCGAGCGGCCuaGGC-CGa-------UGGC-CGag -5'
25513 5' -61.5 NC_005337.1 + 98902 0.69 0.468476
Target:  5'- cGCUCGagcCCGGGgaguacaCGGUgaGCCGGCUCc -3'
miRNA:   3'- aCGAGC---GGCCUag-----GCCGa-UGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 10668 0.69 0.468476
Target:  5'- cGCgCGCCGG--CCGGCgGCgGGUUCu -3'
miRNA:   3'- aCGaGCGGCCuaGGCCGaUGgCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 108987 0.69 0.459401
Target:  5'- aUGCUCuGCCGGAcgCUGGCcgagGagGGCUCg -3'
miRNA:   3'- -ACGAG-CGGCCUa-GGCCGa---UggCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 119015 0.69 0.450421
Target:  5'- cGCgUCGCCacaacguucGGcgCCGGCgccgccaggACCGGUUCg -3'
miRNA:   3'- aCG-AGCGG---------CCuaGGCCGa--------UGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 132297 0.69 0.441539
Target:  5'- cGCgaCGCUGGAgcucgUCCGGCUGCUcGCUg -3'
miRNA:   3'- aCGa-GCGGCCU-----AGGCCGAUGGcCGAg -5'
25513 5' -61.5 NC_005337.1 + 1982 0.69 0.432756
Target:  5'- gUGCaCGCCGGGUCggcgucagcugCGGCUuguCCGGgUCu -3'
miRNA:   3'- -ACGaGCGGCCUAG-----------GCCGAu--GGCCgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.