miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25513 5' -61.5 NC_005337.1 + 44521 0.68 0.477641
Target:  5'- cGCUCGCggCGGAgcuccUCGGCUACCGcGUg- -3'
miRNA:   3'- aCGAGCG--GCCUa----GGCCGAUGGC-CGag -5'
25513 5' -61.5 NC_005337.1 + 45048 0.67 0.56358
Target:  5'- aUGCUCcgcaaGCUGGGcgCCGGCcgGCCGGagaUCc -3'
miRNA:   3'- -ACGAG-----CGGCCUa-GGCCGa-UGGCCg--AG- -5'
25513 5' -61.5 NC_005337.1 + 47648 0.66 0.613145
Target:  5'- aGUUCGCUGuGAcgagcCCGGCgcCCGGCa- -3'
miRNA:   3'- aCGAGCGGC-CUa----GGCCGauGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 49567 0.68 0.486894
Target:  5'- aGCUcguuguccagCGCCGGGUCCGuGggAUCGGCg- -3'
miRNA:   3'- aCGA----------GCGGCCUAGGC-CgaUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 51528 0.67 0.583312
Target:  5'- cGCUCuUCGGcGUgCGGCUGCCGGg-- -3'
miRNA:   3'- aCGAGcGGCC-UAgGCCGAUGGCCgag -5'
25513 5' -61.5 NC_005337.1 + 52488 0.69 0.424076
Target:  5'- cUGCUCGUCGGcgagCUGGUguuccugaACCGGCUg -3'
miRNA:   3'- -ACGAGCGGCCua--GGCCGa-------UGGCCGAg -5'
25513 5' -61.5 NC_005337.1 + 57026 0.68 0.515141
Target:  5'- cGC-CgGCUGGAcgUCCGGCUGCUgGGCg- -3'
miRNA:   3'- aCGaG-CGGCCU--AGGCCGAUGG-CCGag -5'
25513 5' -61.5 NC_005337.1 + 57274 0.67 0.56358
Target:  5'- gGC-CGCgCGGggCCGGCgcGCgCGGCUg -3'
miRNA:   3'- aCGaGCG-GCCuaGGCCGa-UG-GCCGAg -5'
25513 5' -61.5 NC_005337.1 + 59557 0.68 0.524706
Target:  5'- cGCUCGUCGaugcgcaucuGGUCgCGGCggaUGCCGGuCUCc -3'
miRNA:   3'- aCGAGCGGC----------CUAG-GCCG---AUGGCC-GAG- -5'
25513 5' -61.5 NC_005337.1 + 59764 0.67 0.542086
Target:  5'- aGCUCGgUGGAcaaaaaggacagCCGGC-GCCGGCa- -3'
miRNA:   3'- aCGAGCgGCCUa-----------GGCCGaUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 66502 0.67 0.583312
Target:  5'- cGaCUCGCUGGAgCCGcuGCaGCCGGC-Cg -3'
miRNA:   3'- aC-GAGCGGCCUaGGC--CGaUGGCCGaG- -5'
25513 5' -61.5 NC_005337.1 + 68480 0.66 0.633113
Target:  5'- cGC-CGCCgcaccgGGcgCCGcGCUGCUGGCg- -3'
miRNA:   3'- aCGaGCGG------CCuaGGC-CGAUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 69517 0.66 0.593232
Target:  5'- cGcCUCGCCGGAggCCucgucgaucgcaGGgaACCGGCg- -3'
miRNA:   3'- aC-GAGCGGCCUa-GG------------CCgaUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 71093 0.72 0.293752
Target:  5'- cUGCUUGaCCGGAgCgGGCgGCgGGCUCa -3'
miRNA:   3'- -ACGAGC-GGCCUaGgCCGaUGgCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 73022 0.66 0.603178
Target:  5'- -aCUCcCCGGAgaacgacgaCGGgaGCCGGCUCa -3'
miRNA:   3'- acGAGcGGCCUag-------GCCgaUGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 74497 0.74 0.216275
Target:  5'- cGCgUGCCGGcgCCGGCUguccuuuuuguccACCGaGCUCg -3'
miRNA:   3'- aCGaGCGGCCuaGGCCGA-------------UGGC-CGAG- -5'
25513 5' -61.5 NC_005337.1 + 78965 0.67 0.56358
Target:  5'- cGCUCGUgaagCGGAUgCGGUgcgugGCgCGGCUg -3'
miRNA:   3'- aCGAGCG----GCCUAgGCCGa----UG-GCCGAg -5'
25513 5' -61.5 NC_005337.1 + 81359 0.67 0.583312
Target:  5'- -aCUCGCCgaGGAUCCGuGCgcgguUCGGCUg -3'
miRNA:   3'- acGAGCGG--CCUAGGC-CGau---GGCCGAg -5'
25513 5' -61.5 NC_005337.1 + 83049 0.68 0.524706
Target:  5'- aGCUcCGaCCGGucccugcUCCGGauccccaGCCGGCUCa -3'
miRNA:   3'- aCGA-GC-GGCCu------AGGCCga-----UGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 83250 0.67 0.534337
Target:  5'- cUGCUggaGCCGGAgCCuGaCUGgCGGCUCg -3'
miRNA:   3'- -ACGAg--CGGCCUaGGcC-GAUgGCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.