miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25513 5' -61.5 NC_005337.1 + 1982 0.69 0.432756
Target:  5'- gUGCaCGCCGGGUCggcgucagcugCGGCUuguCCGGgUCu -3'
miRNA:   3'- -ACGaGCGGCCUAG-----------GCCGAu--GGCCgAG- -5'
25513 5' -61.5 NC_005337.1 + 3452 0.66 0.653078
Target:  5'- aGC-CGCCuGAUCaCGGCggcACUGGgUCg -3'
miRNA:   3'- aCGaGCGGcCUAG-GCCGa--UGGCCgAG- -5'
25513 5' -61.5 NC_005337.1 + 6392 0.68 0.477641
Target:  5'- cGCUCGCCGGcgCCGcGCgccaccagACUGuGCa- -3'
miRNA:   3'- aCGAGCGGCCuaGGC-CGa-------UGGC-CGag -5'
25513 5' -61.5 NC_005337.1 + 6900 0.67 0.583312
Target:  5'- cGCgcgCGCgCGGGUCC-GC-GCCGGCg- -3'
miRNA:   3'- aCGa--GCG-GCCUAGGcCGaUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 7737 0.66 0.633113
Target:  5'- aGCcgguaGCCGGAUCCGGCgagcaUGGUg- -3'
miRNA:   3'- aCGag---CGGCCUAGGCCGaug--GCCGag -5'
25513 5' -61.5 NC_005337.1 + 9762 0.67 0.553779
Target:  5'- gGCcggCGCCGGGU-UGGC-ACCGGcCUCc -3'
miRNA:   3'- aCGa--GCGGCCUAgGCCGaUGGCC-GAG- -5'
25513 5' -61.5 NC_005337.1 + 10668 0.69 0.468476
Target:  5'- cGCgCGCCGG--CCGGCgGCgGGUUCu -3'
miRNA:   3'- aCGaGCGGCCuaGGCCGaUGgCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 13293 0.67 0.56358
Target:  5'- gUGUUCGCCGGAcCCaaGCagUGCCGGUg- -3'
miRNA:   3'- -ACGAGCGGCCUaGGc-CG--AUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 14435 0.7 0.415501
Target:  5'- cGC-CGCUGGcgCCGGgUACCGaGCg- -3'
miRNA:   3'- aCGaGCGGCCuaGGCCgAUGGC-CGag -5'
25513 5' -61.5 NC_005337.1 + 16015 0.67 0.56358
Target:  5'- cGUUCGCCGGAgugaugaugCgCGGCgucuccuCgGGCUCc -3'
miRNA:   3'- aCGAGCGGCCUa--------G-GCCGau-----GgCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 19101 0.67 0.573426
Target:  5'- gGCggaCGCCGGcGUCCgcgGGC-GCCGGCa- -3'
miRNA:   3'- aCGa--GCGGCC-UAGG---CCGaUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 22031 0.66 0.653078
Target:  5'- gUGUUCGcCCGGcuguUCCGGaagACCGaGUUCc -3'
miRNA:   3'- -ACGAGC-GGCCu---AGGCCga-UGGC-CGAG- -5'
25513 5' -61.5 NC_005337.1 + 23064 0.67 0.583312
Target:  5'- cGCgCGCCGGAaCgCGGCggccgugcCCGGCaUCg -3'
miRNA:   3'- aCGaGCGGCCUaG-GCCGau------GGCCG-AG- -5'
25513 5' -61.5 NC_005337.1 + 36551 0.66 0.593232
Target:  5'- gGCUgGgCGGcgCCGGCgagccaccccACCGGCg- -3'
miRNA:   3'- aCGAgCgGCCuaGGCCGa---------UGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 39479 0.67 0.583312
Target:  5'- gUGCUCGCCGaGGUCUacgccGCcgaucgACCGGCg- -3'
miRNA:   3'- -ACGAGCGGC-CUAGGc----CGa-----UGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 39531 0.72 0.30048
Target:  5'- aGCUCG-CGG-UCgUGGCUGCCGGCg- -3'
miRNA:   3'- aCGAGCgGCCuAG-GCCGAUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 42411 0.66 0.643099
Target:  5'- gGcCUCGCUGuGcgCCGGCU-UCGGCg- -3'
miRNA:   3'- aC-GAGCGGC-CuaGGCCGAuGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 42550 0.66 0.643099
Target:  5'- cUGCgggCGCUGG-UgCGGCUG-CGGCUg -3'
miRNA:   3'- -ACGa--GCGGCCuAgGCCGAUgGCCGAg -5'
25513 5' -61.5 NC_005337.1 + 43336 0.68 0.515141
Target:  5'- gGCUCGCCGacGcgCUGGCcGCCGGg-- -3'
miRNA:   3'- aCGAGCGGC--CuaGGCCGaUGGCCgag -5'
25513 5' -61.5 NC_005337.1 + 43713 0.67 0.56358
Target:  5'- aGCUCGuCCGuGua-CGGCaGCCGGCg- -3'
miRNA:   3'- aCGAGC-GGC-CuagGCCGaUGGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.