miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25513 5' -61.5 NC_005337.1 + 6900 0.67 0.583312
Target:  5'- cGCgcgCGCgCGGGUCC-GC-GCCGGCg- -3'
miRNA:   3'- aCGa--GCG-GCCUAGGcCGaUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 122566 0.67 0.54403
Target:  5'- cUGCUCcaGCCGaGGgugaaCCGGCUgcucuGCCGGUUUg -3'
miRNA:   3'- -ACGAG--CGGC-CUa----GGCCGA-----UGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 9762 0.67 0.553779
Target:  5'- gGCcggCGCCGGGU-UGGC-ACCGGcCUCc -3'
miRNA:   3'- aCGa--GCGGCCUAgGCCGaUGGCC-GAG- -5'
25513 5' -61.5 NC_005337.1 + 115576 0.67 0.553779
Target:  5'- -cCUCGCCGGGgcCCGaGCUGCUGuCUCc -3'
miRNA:   3'- acGAGCGGCCUa-GGC-CGAUGGCcGAG- -5'
25513 5' -61.5 NC_005337.1 + 13293 0.67 0.56358
Target:  5'- gUGUUCGCCGGAcCCaaGCagUGCCGGUg- -3'
miRNA:   3'- -ACGAGCGGCCUaGGc-CG--AUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 45048 0.67 0.56358
Target:  5'- aUGCUCcgcaaGCUGGGcgCCGGCcgGCCGGagaUCc -3'
miRNA:   3'- -ACGAG-----CGGCCUa-GGCCGa-UGGCCg--AG- -5'
25513 5' -61.5 NC_005337.1 + 78965 0.67 0.56358
Target:  5'- cGCUCGUgaagCGGAUgCGGUgcgugGCgCGGCUg -3'
miRNA:   3'- aCGAGCG----GCCUAgGCCGa----UG-GCCGAg -5'
25513 5' -61.5 NC_005337.1 + 133377 0.67 0.56358
Target:  5'- cGCUCGUCGcGcUCgGGCU-CCuGCUCg -3'
miRNA:   3'- aCGAGCGGC-CuAGgCCGAuGGcCGAG- -5'
25513 5' -61.5 NC_005337.1 + 39479 0.67 0.583312
Target:  5'- gUGCUCGCCGaGGUCUacgccGCcgaucgACCGGCg- -3'
miRNA:   3'- -ACGAGCGGC-CUAGGc----CGa-----UGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 83250 0.67 0.534337
Target:  5'- cUGCUggaGCCGGAgCCuGaCUGgCGGCUCg -3'
miRNA:   3'- -ACGAg--CGGCCUaGGcC-GAUgGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 97691 0.67 0.534337
Target:  5'- cUGCaCGCCGcg-CUGGCggACCGGCUa -3'
miRNA:   3'- -ACGaGCGGCcuaGGCCGa-UGGCCGAg -5'
25513 5' -61.5 NC_005337.1 + 83049 0.68 0.524706
Target:  5'- aGCUcCGaCCGGucccugcUCCGGauccccaGCCGGCUCa -3'
miRNA:   3'- aCGA-GC-GGCCu------AGGCCga-----UGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 96777 0.71 0.366361
Target:  5'- gUGUUC-CCGGggUCGGCguuCCGGUUCg -3'
miRNA:   3'- -ACGAGcGGCCuaGGCCGau-GGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 130790 0.71 0.366361
Target:  5'- cGC-CGCCGG-UgCGGCUGCUGcGCUUc -3'
miRNA:   3'- aCGaGCGGCCuAgGCCGAUGGC-CGAG- -5'
25513 5' -61.5 NC_005337.1 + 52488 0.69 0.424076
Target:  5'- cUGCUCGUCGGcgagCUGGUguuccugaACCGGCUg -3'
miRNA:   3'- -ACGAGCGGCCua--GGCCGa-------UGGCCGAg -5'
25513 5' -61.5 NC_005337.1 + 10668 0.69 0.468476
Target:  5'- cGCgCGCCGG--CCGGCgGCgGGUUCu -3'
miRNA:   3'- aCGaGCGGCCuaGGCCGaUGgCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 98902 0.69 0.468476
Target:  5'- cGCUCGagcCCGGGgaguacaCGGUgaGCCGGCUCc -3'
miRNA:   3'- aCGAGC---GGCCUag-----GCCGa-UGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 6392 0.68 0.477641
Target:  5'- cGCUCGCCGGcgCCGcGCgccaccagACUGuGCa- -3'
miRNA:   3'- aCGAGCGGCCuaGGC-CGa-------UGGC-CGag -5'
25513 5' -61.5 NC_005337.1 + 44521 0.68 0.477641
Target:  5'- cGCUCGCggCGGAgcuccUCGGCUACCGcGUg- -3'
miRNA:   3'- aCGAGCG--GCCUa----GGCCGAUGGC-CGag -5'
25513 5' -61.5 NC_005337.1 + 95503 0.68 0.505648
Target:  5'- gGCgCGUCGGGcuccaCCGcGC-ACCGGCUCg -3'
miRNA:   3'- aCGaGCGGCCUa----GGC-CGaUGGCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.