miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25513 5' -61.5 NC_005337.1 + 126537 1.09 0.000693
Target:  5'- aUGCUCGCCGGAUCCGGCUACCGGCUCa -3'
miRNA:   3'- -ACGAGCGGCCUAGGCCGAUGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 59557 0.68 0.524706
Target:  5'- cGCUCGUCGaugcgcaucuGGUCgCGGCggaUGCCGGuCUCc -3'
miRNA:   3'- aCGAGCGGC----------CUAG-GCCG---AUGGCC-GAG- -5'
25513 5' -61.5 NC_005337.1 + 92555 0.67 0.553779
Target:  5'- aGCUCGCC---UCCuGGUUcuucgaggacgGCCGGCUCc -3'
miRNA:   3'- aCGAGCGGccuAGG-CCGA-----------UGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 133692 0.66 0.653078
Target:  5'- cGUUCGCCGGcggcuUCCGcGCgGCCgcGGCg- -3'
miRNA:   3'- aCGAGCGGCCu----AGGC-CGaUGG--CCGag -5'
25513 5' -61.5 NC_005337.1 + 97727 0.7 0.390426
Target:  5'- gGCUCGCCGGcgCCGcccaGCcGCCGGg-- -3'
miRNA:   3'- aCGAGCGGCCuaGGC----CGaUGGCCgag -5'
25513 5' -61.5 NC_005337.1 + 111648 0.7 0.390426
Target:  5'- gGcCUCG-CGGAUCC-GC-GCCGGCUCg -3'
miRNA:   3'- aC-GAGCgGCCUAGGcCGaUGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 92872 0.69 0.431883
Target:  5'- cGCggaCGCCGGAcgUCaucugcccgcgcgCGGUUGCCGGCgUCg -3'
miRNA:   3'- aCGa--GCGGCCU--AG-------------GCCGAUGGCCG-AG- -5'
25513 5' -61.5 NC_005337.1 + 1982 0.69 0.432756
Target:  5'- gUGCaCGCCGGGUCggcgucagcugCGGCUuguCCGGgUCu -3'
miRNA:   3'- -ACGaGCGGCCUAG-----------GCCGAu--GGCCgAG- -5'
25513 5' -61.5 NC_005337.1 + 108987 0.69 0.459401
Target:  5'- aUGCUCuGCCGGAcgCUGGCcgagGagGGCUCg -3'
miRNA:   3'- -ACGAG-CGGCCUa-GGCCGa---UggCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 88734 0.68 0.524706
Target:  5'- gGCggCGCCGacUCCaGC-ACCGGCUCc -3'
miRNA:   3'- aCGa-GCGGCcuAGGcCGaUGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 43336 0.68 0.515141
Target:  5'- gGCUCGCCGacGcgCUGGCcGCCGGg-- -3'
miRNA:   3'- aCGAGCGGC--CuaGGCCGaUGGCCgag -5'
25513 5' -61.5 NC_005337.1 + 119015 0.69 0.450421
Target:  5'- cGCgUCGCCacaacguucGGcgCCGGCgccgccaggACCGGUUCg -3'
miRNA:   3'- aCG-AGCGG---------CCuaGGCCGa--------UGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 107258 0.78 0.122355
Target:  5'- cUGCUgGCCGGGgagcacauccgcuUCCGGCUGCCGGaCg- -3'
miRNA:   3'- -ACGAgCGGCCU-------------AGGCCGAUGGCC-Gag -5'
25513 5' -61.5 NC_005337.1 + 57026 0.68 0.515141
Target:  5'- cGC-CgGCUGGAcgUCCGGCUGCUgGGCg- -3'
miRNA:   3'- aCGaG-CGGCCU--AGGCCGAUGG-CCGag -5'
25513 5' -61.5 NC_005337.1 + 71093 0.72 0.293752
Target:  5'- cUGCUUGaCCGGAgCgGGCgGCgGGCUCa -3'
miRNA:   3'- -ACGAGC-GGCCUaGgCCGaUGgCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 132297 0.69 0.441539
Target:  5'- cGCgaCGCUGGAgcucgUCCGGCUGCUcGCUg -3'
miRNA:   3'- aCGa-GCGGCCU-----AGGCCGAUGGcCGAg -5'
25513 5' -61.5 NC_005337.1 + 85930 0.68 0.524706
Target:  5'- cGCg-GCCuGGuucaCCGGCgcCCGGCUCa -3'
miRNA:   3'- aCGagCGG-CCua--GGCCGauGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 59764 0.67 0.542086
Target:  5'- aGCUCGgUGGAcaaaaaggacagCCGGC-GCCGGCa- -3'
miRNA:   3'- aCGAGCgGCCUa-----------GGCCGaUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 39531 0.72 0.30048
Target:  5'- aGCUCG-CGG-UCgUGGCUGCCGGCg- -3'
miRNA:   3'- aCGAGCgGCCuAG-GCCGAUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 14435 0.7 0.415501
Target:  5'- cGC-CGCUGGcgCCGGgUACCGaGCg- -3'
miRNA:   3'- aCGaGCGGCCuaGGCCgAUGGC-CGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.