Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25513 | 5' | -61.5 | NC_005337.1 | + | 126537 | 1.09 | 0.000693 |
Target: 5'- aUGCUCGCCGGAUCCGGCUACCGGCUCa -3' miRNA: 3'- -ACGAGCGGCCUAGGCCGAUGGCCGAG- -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 107258 | 0.78 | 0.122355 |
Target: 5'- cUGCUgGCCGGGgagcacauccgcuUCCGGCUGCCGGaCg- -3' miRNA: 3'- -ACGAgCGGCCU-------------AGGCCGAUGGCC-Gag -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 74497 | 0.74 | 0.216275 |
Target: 5'- cGCgUGCCGGcgCCGGCUguccuuuuuguccACCGaGCUCg -3' miRNA: 3'- aCGaGCGGCCuaGGCCGA-------------UGGC-CGAG- -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 71093 | 0.72 | 0.293752 |
Target: 5'- cUGCUUGaCCGGAgCgGGCgGCgGGCUCa -3' miRNA: 3'- -ACGAGC-GGCCUaGgCCGaUGgCCGAG- -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 39531 | 0.72 | 0.30048 |
Target: 5'- aGCUCG-CGG-UCgUGGCUGCCGGCg- -3' miRNA: 3'- aCGAGCgGCCuAG-GCCGAUGGCCGag -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 96777 | 0.71 | 0.366361 |
Target: 5'- gUGUUC-CCGGggUCGGCguuCCGGUUCg -3' miRNA: 3'- -ACGAGcGGCCuaGGCCGau-GGCCGAG- -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 130790 | 0.71 | 0.366361 |
Target: 5'- cGC-CGCCGG-UgCGGCUGCUGcGCUUc -3' miRNA: 3'- aCGaGCGGCCuAgGCCGAUGGC-CGAG- -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 111648 | 0.7 | 0.390426 |
Target: 5'- gGcCUCG-CGGAUCC-GC-GCCGGCUCg -3' miRNA: 3'- aC-GAGCgGCCUAGGcCGaUGGCCGAG- -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 97727 | 0.7 | 0.390426 |
Target: 5'- gGCUCGCCGGcgCCGcccaGCcGCCGGg-- -3' miRNA: 3'- aCGAGCGGCCuaGGC----CGaUGGCCgag -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 14435 | 0.7 | 0.415501 |
Target: 5'- cGC-CGCUGGcgCCGGgUACCGaGCg- -3' miRNA: 3'- aCGaGCGGCCuaGGCCgAUGGC-CGag -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 52488 | 0.69 | 0.424076 |
Target: 5'- cUGCUCGUCGGcgagCUGGUguuccugaACCGGCUg -3' miRNA: 3'- -ACGAGCGGCCua--GGCCGa-------UGGCCGAg -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 92872 | 0.69 | 0.431883 |
Target: 5'- cGCggaCGCCGGAcgUCaucugcccgcgcgCGGUUGCCGGCgUCg -3' miRNA: 3'- aCGa--GCGGCCU--AG-------------GCCGAUGGCCG-AG- -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 1982 | 0.69 | 0.432756 |
Target: 5'- gUGCaCGCCGGGUCggcgucagcugCGGCUuguCCGGgUCu -3' miRNA: 3'- -ACGaGCGGCCUAG-----------GCCGAu--GGCCgAG- -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 132297 | 0.69 | 0.441539 |
Target: 5'- cGCgaCGCUGGAgcucgUCCGGCUGCUcGCUg -3' miRNA: 3'- aCGa-GCGGCCU-----AGGCCGAUGGcCGAg -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 119015 | 0.69 | 0.450421 |
Target: 5'- cGCgUCGCCacaacguucGGcgCCGGCgccgccaggACCGGUUCg -3' miRNA: 3'- aCG-AGCGG---------CCuaGGCCGa--------UGGCCGAG- -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 108987 | 0.69 | 0.459401 |
Target: 5'- aUGCUCuGCCGGAcgCUGGCcgagGagGGCUCg -3' miRNA: 3'- -ACGAG-CGGCCUa-GGCCGa---UggCCGAG- -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 98902 | 0.69 | 0.468476 |
Target: 5'- cGCUCGagcCCGGGgaguacaCGGUgaGCCGGCUCc -3' miRNA: 3'- aCGAGC---GGCCUag-----GCCGa-UGGCCGAG- -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 10668 | 0.69 | 0.468476 |
Target: 5'- cGCgCGCCGG--CCGGCgGCgGGUUCu -3' miRNA: 3'- aCGaGCGGCCuaGGCCGaUGgCCGAG- -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 44521 | 0.68 | 0.477641 |
Target: 5'- cGCUCGCggCGGAgcuccUCGGCUACCGcGUg- -3' miRNA: 3'- aCGAGCG--GCCUa----GGCCGAUGGC-CGag -5' |
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25513 | 5' | -61.5 | NC_005337.1 | + | 6392 | 0.68 | 0.477641 |
Target: 5'- cGCUCGCCGGcgCCGcGCgccaccagACUGuGCa- -3' miRNA: 3'- aCGAGCGGCCuaGGC-CGa-------UGGC-CGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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