miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25513 5' -61.5 NC_005337.1 + 133692 0.66 0.653078
Target:  5'- cGUUCGCCGGcggcuUCCGcGCgGCCgcGGCg- -3'
miRNA:   3'- aCGAGCGGCCu----AGGC-CGaUGG--CCGag -5'
25513 5' -61.5 NC_005337.1 + 133692 0.66 0.653078
Target:  5'- cGUUCGCCGGcggcuUCCGcGCgGCCgcGGCg- -3'
miRNA:   3'- aCGAGCGGCCu----AGGC-CGaUGG--CCGag -5'
25513 5' -61.5 NC_005337.1 + 133377 0.67 0.56358
Target:  5'- cGCUCGUCGcGcUCgGGCU-CCuGCUCg -3'
miRNA:   3'- aCGAGCGGC-CuAGgCCGAuGGcCGAG- -5'
25513 5' -61.5 NC_005337.1 + 133377 0.67 0.56358
Target:  5'- cGCUCGUCGcGcUCgGGCU-CCuGCUCg -3'
miRNA:   3'- aCGAGCGGC-CuAGgCCGAuGGcCGAG- -5'
25513 5' -61.5 NC_005337.1 + 133170 0.66 0.613145
Target:  5'- cUGCUC-CCGGcggCGGCgcugcGCCGGCUg -3'
miRNA:   3'- -ACGAGcGGCCuagGCCGa----UGGCCGAg -5'
25513 5' -61.5 NC_005337.1 + 133170 0.66 0.613145
Target:  5'- cUGCUC-CCGGcggCGGCgcugcGCCGGCUg -3'
miRNA:   3'- -ACGAGcGGCCuagGCCGa----UGGCCGAg -5'
25513 5' -61.5 NC_005337.1 + 132297 0.69 0.441539
Target:  5'- cGCgaCGCUGGAgcucgUCCGGCUGCUcGCUg -3'
miRNA:   3'- aCGa-GCGGCCU-----AGGCCGAUGGcCGAg -5'
25513 5' -61.5 NC_005337.1 + 132106 0.66 0.623126
Target:  5'- gUGCgCGUCGGcgCCGuGCgcgGCaGGCUCc -3'
miRNA:   3'- -ACGaGCGGCCuaGGC-CGa--UGgCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 130790 0.71 0.366361
Target:  5'- cGC-CGCCGG-UgCGGCUGCUGcGCUUc -3'
miRNA:   3'- aCGaGCGGCCuAgGCCGAUGGC-CGAG- -5'
25513 5' -61.5 NC_005337.1 + 129618 0.66 0.593232
Target:  5'- aGCUCGuCCGGcggcUCgUGGCcGCCGGgUCu -3'
miRNA:   3'- aCGAGC-GGCCu---AG-GCCGaUGGCCgAG- -5'
25513 5' -61.5 NC_005337.1 + 128463 0.66 0.603178
Target:  5'- ---cCGCCGGA-CCGGCgcgggagACCGcguGCUCg -3'
miRNA:   3'- acgaGCGGCCUaGGCCGa------UGGC---CGAG- -5'
25513 5' -61.5 NC_005337.1 + 127469 0.67 0.583312
Target:  5'- cGCUCguggacagcgGCUGcGAUCCGGCgggcaucgacACCGGCg- -3'
miRNA:   3'- aCGAG----------CGGC-CUAGGCCGa---------UGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 126537 1.09 0.000693
Target:  5'- aUGCUCGCCGGAUCCGGCUACCGGCUCa -3'
miRNA:   3'- -ACGAGCGGCCUAGGCCGAUGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 122566 0.67 0.54403
Target:  5'- cUGCUCcaGCCGaGGgugaaCCGGCUgcucuGCCGGUUUg -3'
miRNA:   3'- -ACGAG--CGGC-CUa----GGCCGA-----UGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 120360 0.66 0.653078
Target:  5'- cGCgUCcuuCgGGAcCCGGCgcgccUGCCGGCUCg -3'
miRNA:   3'- aCG-AGc--GgCCUaGGCCG-----AUGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 119015 0.69 0.450421
Target:  5'- cGCgUCGCCacaacguucGGcgCCGGCgccgccaggACCGGUUCg -3'
miRNA:   3'- aCG-AGCGG---------CCuaGGCCGa--------UGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 115576 0.67 0.553779
Target:  5'- -cCUCGCCGGGgcCCGaGCUGCUGuCUCc -3'
miRNA:   3'- acGAGCGGCCUa-GGC-CGAUGGCcGAG- -5'
25513 5' -61.5 NC_005337.1 + 111648 0.7 0.390426
Target:  5'- gGcCUCG-CGGAUCC-GC-GCCGGCUCg -3'
miRNA:   3'- aC-GAGCgGCCUAGGcCGaUGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 108987 0.69 0.459401
Target:  5'- aUGCUCuGCCGGAcgCUGGCcgagGagGGCUCg -3'
miRNA:   3'- -ACGAG-CGGCCUa-GGCCGa---UggCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 107258 0.78 0.122355
Target:  5'- cUGCUgGCCGGGgagcacauccgcuUCCGGCUGCCGGaCg- -3'
miRNA:   3'- -ACGAgCGGCCU-------------AGGCCGAUGGCC-Gag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.