miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25513 5' -61.5 NC_005337.1 + 99250 0.66 0.617136
Target:  5'- cGCUCGCCgcggacggcgacgcgGGGUUCGGCacggccgucUGCCuGGCg- -3'
miRNA:   3'- aCGAGCGG---------------CCUAGGCCG---------AUGG-CCGag -5'
25513 5' -61.5 NC_005337.1 + 98902 0.69 0.468476
Target:  5'- cGCUCGagcCCGGGgaguacaCGGUgaGCCGGCUCc -3'
miRNA:   3'- aCGAGC---GGCCUag-----GCCGa-UGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 97727 0.7 0.390426
Target:  5'- gGCUCGCCGGcgCCGcccaGCcGCCGGg-- -3'
miRNA:   3'- aCGAGCGGCCuaGGC----CGaUGGCCgag -5'
25513 5' -61.5 NC_005337.1 + 97691 0.67 0.534337
Target:  5'- cUGCaCGCCGcg-CUGGCggACCGGCUa -3'
miRNA:   3'- -ACGaGCGGCcuaGGCCGa-UGGCCGAg -5'
25513 5' -61.5 NC_005337.1 + 96777 0.71 0.366361
Target:  5'- gUGUUC-CCGGggUCGGCguuCCGGUUCg -3'
miRNA:   3'- -ACGAGcGGCCuaGGCCGau-GGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 95503 0.68 0.505648
Target:  5'- gGCgCGUCGGGcuccaCCGcGC-ACCGGCUCg -3'
miRNA:   3'- aCGaGCGGCCUa----GGC-CGaUGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 92872 0.69 0.431883
Target:  5'- cGCggaCGCCGGAcgUCaucugcccgcgcgCGGUUGCCGGCgUCg -3'
miRNA:   3'- aCGa--GCGGCCU--AG-------------GCCGAUGGCCG-AG- -5'
25513 5' -61.5 NC_005337.1 + 92555 0.67 0.553779
Target:  5'- aGCUCGCC---UCCuGGUUcuucgaggacgGCCGGCUCc -3'
miRNA:   3'- aCGAGCGGccuAGG-CCGA-----------UGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 92046 0.66 0.640104
Target:  5'- aGCUgGCCgugcgcgaacucgcGGAcgaCCGGCUguACCGGCa- -3'
miRNA:   3'- aCGAgCGG--------------CCUa--GGCCGA--UGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 89201 0.67 0.583312
Target:  5'- gGCacgUCgGCaCGGAucUCCGGCcgGCCGGCg- -3'
miRNA:   3'- aCG---AG-CG-GCCU--AGGCCGa-UGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 88734 0.68 0.524706
Target:  5'- gGCggCGCCGacUCCaGC-ACCGGCUCc -3'
miRNA:   3'- aCGa-GCGGCcuAGGcCGaUGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 85930 0.68 0.524706
Target:  5'- cGCg-GCCuGGuucaCCGGCgcCCGGCUCa -3'
miRNA:   3'- aCGagCGG-CCua--GGCCGauGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 83250 0.67 0.534337
Target:  5'- cUGCUggaGCCGGAgCCuGaCUGgCGGCUCg -3'
miRNA:   3'- -ACGAg--CGGCCUaGGcC-GAUgGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 83049 0.68 0.524706
Target:  5'- aGCUcCGaCCGGucccugcUCCGGauccccaGCCGGCUCa -3'
miRNA:   3'- aCGA-GC-GGCCu------AGGCCga-----UGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 81359 0.67 0.583312
Target:  5'- -aCUCGCCgaGGAUCCGuGCgcgguUCGGCUg -3'
miRNA:   3'- acGAGCGG--CCUAGGC-CGau---GGCCGAg -5'
25513 5' -61.5 NC_005337.1 + 78965 0.67 0.56358
Target:  5'- cGCUCGUgaagCGGAUgCGGUgcgugGCgCGGCUg -3'
miRNA:   3'- aCGAGCG----GCCUAgGCCGa----UG-GCCGAg -5'
25513 5' -61.5 NC_005337.1 + 74497 0.74 0.216275
Target:  5'- cGCgUGCCGGcgCCGGCUguccuuuuuguccACCGaGCUCg -3'
miRNA:   3'- aCGaGCGGCCuaGGCCGA-------------UGGC-CGAG- -5'
25513 5' -61.5 NC_005337.1 + 73022 0.66 0.603178
Target:  5'- -aCUCcCCGGAgaacgacgaCGGgaGCCGGCUCa -3'
miRNA:   3'- acGAGcGGCCUag-------GCCgaUGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 71093 0.72 0.293752
Target:  5'- cUGCUUGaCCGGAgCgGGCgGCgGGCUCa -3'
miRNA:   3'- -ACGAGC-GGCCUaGgCCGaUGgCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 69517 0.66 0.593232
Target:  5'- cGcCUCGCCGGAggCCucgucgaucgcaGGgaACCGGCg- -3'
miRNA:   3'- aC-GAGCGGCCUa-GG------------CCgaUGGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.