miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 3' -53.3 NC_005337.1 + 96379 0.67 0.937814
Target:  5'- --aCCCGgUCGCgCCcGAGCAggCGGCg -3'
miRNA:   3'- ccaGGGUgAGUGaGGaCUUGUa-GCCG- -5'
25514 3' -53.3 NC_005337.1 + 10126 0.67 0.944416
Target:  5'- cGUCgCuCUCGCcgUCCUGGGCGuccaugucaucuuccUCGGCg -3'
miRNA:   3'- cCAGgGuGAGUG--AGGACUUGU---------------AGCCG- -5'
25514 3' -53.3 NC_005337.1 + 7428 0.67 0.932803
Target:  5'- cGUCCggccaUACUCGCcCCgGAaguucACGUCGGCg -3'
miRNA:   3'- cCAGG-----GUGAGUGaGGaCU-----UGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 51666 0.67 0.932803
Target:  5'- --gCCCGCcgUCGCcCCUGGACGccuaCGGCg -3'
miRNA:   3'- ccaGGGUG--AGUGaGGACUUGUa---GCCG- -5'
25514 3' -53.3 NC_005337.1 + 95639 0.67 0.932803
Target:  5'- cGGgCCCGCUCGCcaUCUUGAACA-C-GCa -3'
miRNA:   3'- -CCaGGGUGAGUG--AGGACUUGUaGcCG- -5'
25514 3' -53.3 NC_005337.1 + 43251 0.67 0.9471
Target:  5'- aGGUCgaACUCGCUCUcGAgcgccgccaGCAUcCGGCu -3'
miRNA:   3'- -CCAGggUGAGUGAGGaCU---------UGUA-GCCG- -5'
25514 3' -53.3 NC_005337.1 + 38712 0.67 0.9471
Target:  5'- cGG-CCCG-UCG-UCCUGAcgggggacaccgGCGUCGGCa -3'
miRNA:   3'- -CCaGGGUgAGUgAGGACU------------UGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 56707 0.67 0.95138
Target:  5'- uGGUCagCgGCUCcguGCUCCUGAaguACG-CGGCc -3'
miRNA:   3'- -CCAG--GgUGAG---UGAGGACU---UGUaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 42719 0.68 0.922041
Target:  5'- --aCCUGCUCauGCUgCUGAACAUCcGCg -3'
miRNA:   3'- ccaGGGUGAG--UGAgGACUUGUAGcCG- -5'
25514 3' -53.3 NC_005337.1 + 117374 0.68 0.909062
Target:  5'- uGGUCCagaaga-UCCUGGACcUCGGCg -3'
miRNA:   3'- -CCAGGgugagugAGGACUUGuAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 91787 0.68 0.904048
Target:  5'- aGUUCCGCgCGCUCCacGGCggCGGCg -3'
miRNA:   3'- cCAGGGUGaGUGAGGacUUGuaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 15736 0.68 0.904048
Target:  5'- aGGUCCCACgug-UCCUGGcCGaUGGCa -3'
miRNA:   3'- -CCAGGGUGagugAGGACUuGUaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 105584 0.68 0.910291
Target:  5'- aGGaUCCCACUgGCUUCUGGGggaAggGGCu -3'
miRNA:   3'- -CC-AGGGUGAgUGAGGACUUg--UagCCG- -5'
25514 3' -53.3 NC_005337.1 + 75853 0.68 0.910291
Target:  5'- cGUCUCGC-CGCUCCggaaGAGCuucgUGGCg -3'
miRNA:   3'- cCAGGGUGaGUGAGGa---CUUGua--GCCG- -5'
25514 3' -53.3 NC_005337.1 + 83116 0.68 0.916289
Target:  5'- uGUUCCGCgcgUCGCUCUgcgUGGACuugagguaGUCGGCg -3'
miRNA:   3'- cCAGGGUG---AGUGAGG---ACUUG--------UAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 96874 0.68 0.927546
Target:  5'- -cUCCgCGCggaugCGCggCgUGGACGUCGGCg -3'
miRNA:   3'- ccAGG-GUGa----GUGa-GgACUUGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 27617 0.68 0.927546
Target:  5'- -cUCCCGCcgcucgCGCUCCgGGAUcUUGGCg -3'
miRNA:   3'- ccAGGGUGa-----GUGAGGaCUUGuAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 56130 0.68 0.927546
Target:  5'- cGUCCCGacgcCUCGCUCgUGAACcgCcuGCa -3'
miRNA:   3'- cCAGGGU----GAGUGAGgACUUGuaGc-CG- -5'
25514 3' -53.3 NC_005337.1 + 57319 0.69 0.890841
Target:  5'- aGUCUCGCUCAcCUCCgcGGACAUCa-- -3'
miRNA:   3'- cCAGGGUGAGU-GAGGa-CUUGUAGccg -5'
25514 3' -53.3 NC_005337.1 + 86750 0.69 0.891524
Target:  5'- aGGUCCCGCUCcggcacgauggccauCUCCggcguccgcacGGGCggCGGCa -3'
miRNA:   3'- -CCAGGGUGAGu--------------GAGGa----------CUUGuaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.