miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 3' -53.3 NC_005337.1 + 27617 0.68 0.927546
Target:  5'- -cUCCCGCcgcucgCGCUCCgGGAUcUUGGCg -3'
miRNA:   3'- ccAGGGUGa-----GUGAGGaCUUGuAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 96874 0.68 0.927546
Target:  5'- -cUCCgCGCggaugCGCggCgUGGACGUCGGCg -3'
miRNA:   3'- ccAGG-GUGa----GUGa-GgACUUGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 56130 0.68 0.927546
Target:  5'- cGUCCCGacgcCUCGCUCgUGAACcgCcuGCa -3'
miRNA:   3'- cCAGGGU----GAGUGAGgACUUGuaGc-CG- -5'
25514 3' -53.3 NC_005337.1 + 7428 0.67 0.932803
Target:  5'- cGUCCggccaUACUCGCcCCgGAaguucACGUCGGCg -3'
miRNA:   3'- cCAGG-----GUGAGUGaGGaCU-----UGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 51666 0.67 0.932803
Target:  5'- --gCCCGCcgUCGCcCCUGGACGccuaCGGCg -3'
miRNA:   3'- ccaGGGUG--AGUGaGGACUUGUa---GCCG- -5'
25514 3' -53.3 NC_005337.1 + 101788 0.67 0.932803
Target:  5'- cGGgauccCCCGCUCaACUCC-GGGCuUCGGa -3'
miRNA:   3'- -CCa----GGGUGAG-UGAGGaCUUGuAGCCg -5'
25514 3' -53.3 NC_005337.1 + 95639 0.67 0.932803
Target:  5'- cGGgCCCGCUCGCcaUCUUGAACA-C-GCa -3'
miRNA:   3'- -CCaGGGUGAGUG--AGGACUUGUaGcCG- -5'
25514 3' -53.3 NC_005337.1 + 96379 0.67 0.937814
Target:  5'- --aCCCGgUCGCgCCcGAGCAggCGGCg -3'
miRNA:   3'- ccaGGGUgAGUGaGGaCUUGUa-GCCG- -5'
25514 3' -53.3 NC_005337.1 + 65752 0.67 0.942579
Target:  5'- cGGcUCCgACUCGgugUUCCUG-ACGcCGGCg -3'
miRNA:   3'- -CC-AGGgUGAGU---GAGGACuUGUaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 10126 0.67 0.944416
Target:  5'- cGUCgCuCUCGCcgUCCUGGGCGuccaugucaucuuccUCGGCg -3'
miRNA:   3'- cCAGgGuGAGUG--AGGACUUGU---------------AGCCG- -5'
25514 3' -53.3 NC_005337.1 + 43251 0.67 0.9471
Target:  5'- aGGUCgaACUCGCUCUcGAgcgccgccaGCAUcCGGCu -3'
miRNA:   3'- -CCAGggUGAGUGAGGaCU---------UGUA-GCCG- -5'
25514 3' -53.3 NC_005337.1 + 38712 0.67 0.9471
Target:  5'- cGG-CCCG-UCG-UCCUGAcgggggacaccgGCGUCGGCa -3'
miRNA:   3'- -CCaGGGUgAGUgAGGACU------------UGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 56707 0.67 0.95138
Target:  5'- uGGUCagCgGCUCcguGCUCCUGAaguACG-CGGCc -3'
miRNA:   3'- -CCAG--GgUGAG---UGAGGACU---UGUaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 21925 0.66 0.954632
Target:  5'- aGGUggCCGCgCGCUCCgccgagcucgcgGAGuCAUCGGCg -3'
miRNA:   3'- -CCAg-GGUGaGUGAGGa-----------CUU-GUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 89515 0.66 0.955421
Target:  5'- uGGUUCCAgUacaGCUCCccGAUGUUGGCg -3'
miRNA:   3'- -CCAGGGUgAg--UGAGGacUUGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 131331 0.66 0.955421
Target:  5'- --aCCgCGCUCAUgcgcgCCgUGcGCGUCGGCa -3'
miRNA:   3'- ccaGG-GUGAGUGa----GG-ACuUGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 131362 0.66 0.959228
Target:  5'- -cUCCgGCgacgcCGCUCCUGGACGU-GGUc -3'
miRNA:   3'- ccAGGgUGa----GUGAGGACUUGUAgCCG- -5'
25514 3' -53.3 NC_005337.1 + 36649 0.66 0.959228
Target:  5'- -cUCCCACUCG-UCCcgGAAgGUgcCGGCg -3'
miRNA:   3'- ccAGGGUGAGUgAGGa-CUUgUA--GCCG- -5'
25514 3' -53.3 NC_005337.1 + 127995 0.66 0.959228
Target:  5'- uGGaaCUGCUgcggcUGCUCCUGGACGcCGGCg -3'
miRNA:   3'- -CCagGGUGA-----GUGAGGACUUGUaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 132076 0.66 0.962806
Target:  5'- cGGgccgcgCCCGCgucCGCcgCCUGcgccgugcGCGUCGGCg -3'
miRNA:   3'- -CCa-----GGGUGa--GUGa-GGACu-------UGUAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.