Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25514 | 3' | -53.3 | NC_005337.1 | + | 88388 | 0.66 | 0.966159 |
Target: 5'- cGUCCCACgcgCAgUCCgaguACAU-GGCg -3' miRNA: 3'- cCAGGGUGa--GUgAGGacu-UGUAgCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 111388 | 0.66 | 0.966159 |
Target: 5'- cGGUgCCGCUCGCgcg-GcACGUCGGa -3' miRNA: 3'- -CCAgGGUGAGUGaggaCuUGUAGCCg -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 7262 | 0.66 | 0.966159 |
Target: 5'- uGGUCuCCACgacgCGCagCUGGACguaGUCGuGCu -3' miRNA: 3'- -CCAG-GGUGa---GUGagGACUUG---UAGC-CG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 114713 | 0.66 | 0.968375 |
Target: 5'- uGGUCUCGCgCGC-CCUGAuuaaggagugucugACGUUGGa -3' miRNA: 3'- -CCAGGGUGaGUGaGGACU--------------UGUAGCCg -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 60849 | 0.66 | 0.969292 |
Target: 5'- cGUgUCGCUCAugauCUCCUGGaacuccgacgcGCGUcCGGCg -3' miRNA: 3'- cCAgGGUGAGU----GAGGACU-----------UGUA-GCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 53902 | 0.66 | 0.969292 |
Target: 5'- cGGcCCCGCUgGCgguggagaCgCUGGACGgugCGGCc -3' miRNA: 3'- -CCaGGGUGAgUGa-------G-GACUUGUa--GCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 41837 | 0.66 | 0.969292 |
Target: 5'- uGUCCgGCUC-CUCCU---CGUCGGg -3' miRNA: 3'- cCAGGgUGAGuGAGGAcuuGUAGCCg -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 61020 | 0.66 | 0.970486 |
Target: 5'- cGGUCCgAguacgcCUCcaccagguaguugcgGCUCCUGGugGUcCGGCc -3' miRNA: 3'- -CCAGGgU------GAG---------------UGAGGACUugUA-GCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 25418 | 0.66 | 0.970486 |
Target: 5'- gGGUUCCGCUCGCacgacggcgugucgCCcGcGCGcuUCGGCa -3' miRNA: 3'- -CCAGGGUGAGUGa-------------GGaCuUGU--AGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 85065 | 0.66 | 0.972214 |
Target: 5'- aGGUCCUugUacaGCgUCC-GGugGUUGGCc -3' miRNA: 3'- -CCAGGGugAg--UG-AGGaCUugUAGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 131771 | 0.66 | 0.972214 |
Target: 5'- aGGUgCgGCa-GCUgCUGAGCcUCGGCg -3' miRNA: 3'- -CCAgGgUGagUGAgGACUUGuAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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