miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 3' -53.3 NC_005337.1 + 126255 1.14 0.002557
Target:  5'- aGGUCCCACUCACUCCUGAACAUCGGCc -3'
miRNA:   3'- -CCAGGGUGAGUGAGGACUUGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 10600 0.72 0.715701
Target:  5'- cGGUCCCGC-CGCggggGAGCggCGGCg -3'
miRNA:   3'- -CCAGGGUGaGUGaggaCUUGuaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 22848 0.71 0.793455
Target:  5'- --aCCCGCUCG-UgCUGGACcgCGGCg -3'
miRNA:   3'- ccaGGGUGAGUgAgGACUUGuaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 123547 0.7 0.820391
Target:  5'- cGUCCCAC-CGC-CCUGAccACAU-GGCc -3'
miRNA:   3'- cCAGGGUGaGUGaGGACU--UGUAgCCG- -5'
25514 3' -53.3 NC_005337.1 + 103680 0.7 0.820391
Target:  5'- -cUCCCGCUCGCagcugcaaugccUCCUGGcGCA-CGGCc -3'
miRNA:   3'- ccAGGGUGAGUG------------AGGACU-UGUaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 92663 0.7 0.823867
Target:  5'- aGGUgCUgcacugcuucgacguGCUCACcuUCCUGGGCggCGGCg -3'
miRNA:   3'- -CCAgGG---------------UGAGUG--AGGACUUGuaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 94017 0.7 0.829027
Target:  5'- cGUCCUACUguCUCgUGGugGcgCGGCg -3'
miRNA:   3'- cCAGGGUGAguGAGgACUugUa-GCCG- -5'
25514 3' -53.3 NC_005337.1 + 115206 0.7 0.845736
Target:  5'- cGGUgCCGCUgcgggCGCUgCUGAAgAUgGGCg -3'
miRNA:   3'- -CCAgGGUGA-----GUGAgGACUUgUAgCCG- -5'
25514 3' -53.3 NC_005337.1 + 133381 0.69 0.883882
Target:  5'- cGUCgCGCUCggGCUCCUGc---UCGGCg -3'
miRNA:   3'- cCAGgGUGAG--UGAGGACuuguAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 133381 0.69 0.883882
Target:  5'- cGUCgCGCUCggGCUCCUGc---UCGGCg -3'
miRNA:   3'- cCAGgGUGAG--UGAGGACuuguAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 56287 0.69 0.890841
Target:  5'- uGUCCaacCUCACgaaCCUGAACGUgCGGg -3'
miRNA:   3'- cCAGGgu-GAGUGa--GGACUUGUA-GCCg -5'
25514 3' -53.3 NC_005337.1 + 57319 0.69 0.890841
Target:  5'- aGUCUCGCUCAcCUCCgcGGACAUCa-- -3'
miRNA:   3'- cCAGGGUGAGU-GAGGa-CUUGUAGccg -5'
25514 3' -53.3 NC_005337.1 + 86750 0.69 0.891524
Target:  5'- aGGUCCCGCUCcggcacgauggccauCUCCggcguccgcacGGGCggCGGCa -3'
miRNA:   3'- -CCAGGGUGAGu--------------GAGGa----------CUUGuaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 91787 0.68 0.904048
Target:  5'- aGUUCCGCgCGCUCCacGGCggCGGCg -3'
miRNA:   3'- cCAGGGUGaGUGAGGacUUGuaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 15736 0.68 0.904048
Target:  5'- aGGUCCCACgug-UCCUGGcCGaUGGCa -3'
miRNA:   3'- -CCAGGGUGagugAGGACUuGUaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 117374 0.68 0.909062
Target:  5'- uGGUCCagaaga-UCCUGGACcUCGGCg -3'
miRNA:   3'- -CCAGGgugagugAGGACUUGuAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 105584 0.68 0.910291
Target:  5'- aGGaUCCCACUgGCUUCUGGGggaAggGGCu -3'
miRNA:   3'- -CC-AGGGUGAgUGAGGACUUg--UagCCG- -5'
25514 3' -53.3 NC_005337.1 + 75853 0.68 0.910291
Target:  5'- cGUCUCGC-CGCUCCggaaGAGCuucgUGGCg -3'
miRNA:   3'- cCAGGGUGaGUGAGGa---CUUGua--GCCG- -5'
25514 3' -53.3 NC_005337.1 + 83116 0.68 0.916289
Target:  5'- uGUUCCGCgcgUCGCUCUgcgUGGACuugagguaGUCGGCg -3'
miRNA:   3'- cCAGGGUG---AGUGAGG---ACUUG--------UAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 42719 0.68 0.922041
Target:  5'- --aCCUGCUCauGCUgCUGAACAUCcGCg -3'
miRNA:   3'- ccaGGGUGAG--UGAgGACUUGUAGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.