miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 3' -53.3 NC_005337.1 + 89515 0.66 0.955421
Target:  5'- uGGUUCCAgUacaGCUCCccGAUGUUGGCg -3'
miRNA:   3'- -CCAGGGUgAg--UGAGGacUUGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 7428 0.67 0.932803
Target:  5'- cGUCCggccaUACUCGCcCCgGAaguucACGUCGGCg -3'
miRNA:   3'- cCAGG-----GUGAGUGaGGaCU-----UGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 51666 0.67 0.932803
Target:  5'- --gCCCGCcgUCGCcCCUGGACGccuaCGGCg -3'
miRNA:   3'- ccaGGGUG--AGUGaGGACUUGUa---GCCG- -5'
25514 3' -53.3 NC_005337.1 + 95639 0.67 0.932803
Target:  5'- cGGgCCCGCUCGCcaUCUUGAACA-C-GCa -3'
miRNA:   3'- -CCaGGGUGAGUG--AGGACUUGUaGcCG- -5'
25514 3' -53.3 NC_005337.1 + 65752 0.67 0.942579
Target:  5'- cGGcUCCgACUCGgugUUCCUG-ACGcCGGCg -3'
miRNA:   3'- -CC-AGGgUGAGU---GAGGACuUGUaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 43251 0.67 0.9471
Target:  5'- aGGUCgaACUCGCUCUcGAgcgccgccaGCAUcCGGCu -3'
miRNA:   3'- -CCAGggUGAGUGAGGaCU---------UGUA-GCCG- -5'
25514 3' -53.3 NC_005337.1 + 38712 0.67 0.9471
Target:  5'- cGG-CCCG-UCG-UCCUGAcgggggacaccgGCGUCGGCa -3'
miRNA:   3'- -CCaGGGUgAGUgAGGACU------------UGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 56707 0.67 0.95138
Target:  5'- uGGUCagCgGCUCcguGCUCCUGAaguACG-CGGCc -3'
miRNA:   3'- -CCAG--GgUGAG---UGAGGACU---UGUaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 21925 0.66 0.954632
Target:  5'- aGGUggCCGCgCGCUCCgccgagcucgcgGAGuCAUCGGCg -3'
miRNA:   3'- -CCAg-GGUGaGUGAGGa-----------CUU-GUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 56130 0.68 0.927546
Target:  5'- cGUCCCGacgcCUCGCUCgUGAACcgCcuGCa -3'
miRNA:   3'- cCAGGGU----GAGUGAGgACUUGuaGc-CG- -5'
25514 3' -53.3 NC_005337.1 + 27617 0.68 0.927546
Target:  5'- -cUCCCGCcgcucgCGCUCCgGGAUcUUGGCg -3'
miRNA:   3'- ccAGGGUGa-----GUGAGGaCUUGuAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 96874 0.68 0.927546
Target:  5'- -cUCCgCGCggaugCGCggCgUGGACGUCGGCg -3'
miRNA:   3'- ccAGG-GUGa----GUGa-GgACUUGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 123547 0.7 0.820391
Target:  5'- cGUCCCAC-CGC-CCUGAccACAU-GGCc -3'
miRNA:   3'- cCAGGGUGaGUGaGGACU--UGUAgCCG- -5'
25514 3' -53.3 NC_005337.1 + 133381 0.69 0.883882
Target:  5'- cGUCgCGCUCggGCUCCUGc---UCGGCg -3'
miRNA:   3'- cCAGgGUGAG--UGAGGACuuguAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 56287 0.69 0.890841
Target:  5'- uGUCCaacCUCACgaaCCUGAACGUgCGGg -3'
miRNA:   3'- cCAGGgu-GAGUGa--GGACUUGUA-GCCg -5'
25514 3' -53.3 NC_005337.1 + 57319 0.69 0.890841
Target:  5'- aGUCUCGCUCAcCUCCgcGGACAUCa-- -3'
miRNA:   3'- cCAGGGUGAGU-GAGGa-CUUGUAGccg -5'
25514 3' -53.3 NC_005337.1 + 15736 0.68 0.904048
Target:  5'- aGGUCCCACgug-UCCUGGcCGaUGGCa -3'
miRNA:   3'- -CCAGGGUGagugAGGACUuGUaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 105584 0.68 0.910291
Target:  5'- aGGaUCCCACUgGCUUCUGGGggaAggGGCu -3'
miRNA:   3'- -CC-AGGGUGAgUGAGGACUUg--UagCCG- -5'
25514 3' -53.3 NC_005337.1 + 75853 0.68 0.910291
Target:  5'- cGUCUCGC-CGCUCCggaaGAGCuucgUGGCg -3'
miRNA:   3'- cCAGGGUGaGUGAGGa---CUUGua--GCCG- -5'
25514 3' -53.3 NC_005337.1 + 83116 0.68 0.916289
Target:  5'- uGUUCCGCgcgUCGCUCUgcgUGGACuugagguaGUCGGCg -3'
miRNA:   3'- cCAGGGUG---AGUGAGG---ACUUG--------UAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.