miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 3' -53.3 NC_005337.1 + 7262 0.66 0.966159
Target:  5'- uGGUCuCCACgacgCGCagCUGGACguaGUCGuGCu -3'
miRNA:   3'- -CCAG-GGUGa---GUGagGACUUG---UAGC-CG- -5'
25514 3' -53.3 NC_005337.1 + 7428 0.67 0.932803
Target:  5'- cGUCCggccaUACUCGCcCCgGAaguucACGUCGGCg -3'
miRNA:   3'- cCAGG-----GUGAGUGaGGaCU-----UGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 10126 0.67 0.944416
Target:  5'- cGUCgCuCUCGCcgUCCUGGGCGuccaugucaucuuccUCGGCg -3'
miRNA:   3'- cCAGgGuGAGUG--AGGACUUGU---------------AGCCG- -5'
25514 3' -53.3 NC_005337.1 + 10600 0.72 0.715701
Target:  5'- cGGUCCCGC-CGCggggGAGCggCGGCg -3'
miRNA:   3'- -CCAGGGUGaGUGaggaCUUGuaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 15736 0.68 0.904048
Target:  5'- aGGUCCCACgug-UCCUGGcCGaUGGCa -3'
miRNA:   3'- -CCAGGGUGagugAGGACUuGUaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 21925 0.66 0.954632
Target:  5'- aGGUggCCGCgCGCUCCgccgagcucgcgGAGuCAUCGGCg -3'
miRNA:   3'- -CCAg-GGUGaGUGAGGa-----------CUU-GUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 22848 0.71 0.793455
Target:  5'- --aCCCGCUCG-UgCUGGACcgCGGCg -3'
miRNA:   3'- ccaGGGUGAGUgAgGACUUGuaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 25418 0.66 0.970486
Target:  5'- gGGUUCCGCUCGCacgacggcgugucgCCcGcGCGcuUCGGCa -3'
miRNA:   3'- -CCAGGGUGAGUGa-------------GGaCuUGU--AGCCG- -5'
25514 3' -53.3 NC_005337.1 + 27617 0.68 0.927546
Target:  5'- -cUCCCGCcgcucgCGCUCCgGGAUcUUGGCg -3'
miRNA:   3'- ccAGGGUGa-----GUGAGGaCUUGuAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 36649 0.66 0.959228
Target:  5'- -cUCCCACUCG-UCCcgGAAgGUgcCGGCg -3'
miRNA:   3'- ccAGGGUGAGUgAGGa-CUUgUA--GCCG- -5'
25514 3' -53.3 NC_005337.1 + 38712 0.67 0.9471
Target:  5'- cGG-CCCG-UCG-UCCUGAcgggggacaccgGCGUCGGCa -3'
miRNA:   3'- -CCaGGGUgAGUgAGGACU------------UGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 41837 0.66 0.969292
Target:  5'- uGUCCgGCUC-CUCCU---CGUCGGg -3'
miRNA:   3'- cCAGGgUGAGuGAGGAcuuGUAGCCg -5'
25514 3' -53.3 NC_005337.1 + 42719 0.68 0.922041
Target:  5'- --aCCUGCUCauGCUgCUGAACAUCcGCg -3'
miRNA:   3'- ccaGGGUGAG--UGAgGACUUGUAGcCG- -5'
25514 3' -53.3 NC_005337.1 + 43251 0.67 0.9471
Target:  5'- aGGUCgaACUCGCUCUcGAgcgccgccaGCAUcCGGCu -3'
miRNA:   3'- -CCAGggUGAGUGAGGaCU---------UGUA-GCCG- -5'
25514 3' -53.3 NC_005337.1 + 51666 0.67 0.932803
Target:  5'- --gCCCGCcgUCGCcCCUGGACGccuaCGGCg -3'
miRNA:   3'- ccaGGGUG--AGUGaGGACUUGUa---GCCG- -5'
25514 3' -53.3 NC_005337.1 + 53902 0.66 0.969292
Target:  5'- cGGcCCCGCUgGCgguggagaCgCUGGACGgugCGGCc -3'
miRNA:   3'- -CCaGGGUGAgUGa-------G-GACUUGUa--GCCG- -5'
25514 3' -53.3 NC_005337.1 + 56130 0.68 0.927546
Target:  5'- cGUCCCGacgcCUCGCUCgUGAACcgCcuGCa -3'
miRNA:   3'- cCAGGGU----GAGUGAGgACUUGuaGc-CG- -5'
25514 3' -53.3 NC_005337.1 + 56287 0.69 0.890841
Target:  5'- uGUCCaacCUCACgaaCCUGAACGUgCGGg -3'
miRNA:   3'- cCAGGgu-GAGUGa--GGACUUGUA-GCCg -5'
25514 3' -53.3 NC_005337.1 + 56707 0.67 0.95138
Target:  5'- uGGUCagCgGCUCcguGCUCCUGAaguACG-CGGCc -3'
miRNA:   3'- -CCAG--GgUGAG---UGAGGACU---UGUaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 57319 0.69 0.890841
Target:  5'- aGUCUCGCUCAcCUCCgcGGACAUCa-- -3'
miRNA:   3'- cCAGGGUGAGU-GAGGa-CUUGUAGccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.