miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 3' -53.3 NC_005337.1 + 133381 0.69 0.883882
Target:  5'- cGUCgCGCUCggGCUCCUGc---UCGGCg -3'
miRNA:   3'- cCAGgGUGAG--UGAGGACuuguAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 133381 0.69 0.883882
Target:  5'- cGUCgCGCUCggGCUCCUGc---UCGGCg -3'
miRNA:   3'- cCAGgGUGAG--UGAGGACuuguAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 132076 0.66 0.962806
Target:  5'- cGGgccgcgCCCGCgucCGCcgCCUGcgccgugcGCGUCGGCg -3'
miRNA:   3'- -CCa-----GGGUGa--GUGa-GGACu-------UGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 131771 0.66 0.972214
Target:  5'- aGGUgCgGCa-GCUgCUGAGCcUCGGCg -3'
miRNA:   3'- -CCAgGgUGagUGAgGACUUGuAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 131362 0.66 0.959228
Target:  5'- -cUCCgGCgacgcCGCUCCUGGACGU-GGUc -3'
miRNA:   3'- ccAGGgUGa----GUGAGGACUUGUAgCCG- -5'
25514 3' -53.3 NC_005337.1 + 131331 0.66 0.955421
Target:  5'- --aCCgCGCUCAUgcgcgCCgUGcGCGUCGGCa -3'
miRNA:   3'- ccaGG-GUGAGUGa----GG-ACuUGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 127995 0.66 0.959228
Target:  5'- uGGaaCUGCUgcggcUGCUCCUGGACGcCGGCg -3'
miRNA:   3'- -CCagGGUGA-----GUGAGGACUUGUaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 126255 1.14 0.002557
Target:  5'- aGGUCCCACUCACUCCUGAACAUCGGCc -3'
miRNA:   3'- -CCAGGGUGAGUGAGGACUUGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 123547 0.7 0.820391
Target:  5'- cGUCCCAC-CGC-CCUGAccACAU-GGCc -3'
miRNA:   3'- cCAGGGUGaGUGaGGACU--UGUAgCCG- -5'
25514 3' -53.3 NC_005337.1 + 117374 0.68 0.909062
Target:  5'- uGGUCCagaaga-UCCUGGACcUCGGCg -3'
miRNA:   3'- -CCAGGgugagugAGGACUUGuAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 115206 0.7 0.845736
Target:  5'- cGGUgCCGCUgcgggCGCUgCUGAAgAUgGGCg -3'
miRNA:   3'- -CCAgGGUGA-----GUGAgGACUUgUAgCCG- -5'
25514 3' -53.3 NC_005337.1 + 114713 0.66 0.968375
Target:  5'- uGGUCUCGCgCGC-CCUGAuuaaggagugucugACGUUGGa -3'
miRNA:   3'- -CCAGGGUGaGUGaGGACU--------------UGUAGCCg -5'
25514 3' -53.3 NC_005337.1 + 111388 0.66 0.966159
Target:  5'- cGGUgCCGCUCGCgcg-GcACGUCGGa -3'
miRNA:   3'- -CCAgGGUGAGUGaggaCuUGUAGCCg -5'
25514 3' -53.3 NC_005337.1 + 105584 0.68 0.910291
Target:  5'- aGGaUCCCACUgGCUUCUGGGggaAggGGCu -3'
miRNA:   3'- -CC-AGGGUGAgUGAGGACUUg--UagCCG- -5'
25514 3' -53.3 NC_005337.1 + 103680 0.7 0.820391
Target:  5'- -cUCCCGCUCGCagcugcaaugccUCCUGGcGCA-CGGCc -3'
miRNA:   3'- ccAGGGUGAGUG------------AGGACU-UGUaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 101788 0.67 0.932803
Target:  5'- cGGgauccCCCGCUCaACUCC-GGGCuUCGGa -3'
miRNA:   3'- -CCa----GGGUGAG-UGAGGaCUUGuAGCCg -5'
25514 3' -53.3 NC_005337.1 + 96874 0.68 0.927546
Target:  5'- -cUCCgCGCggaugCGCggCgUGGACGUCGGCg -3'
miRNA:   3'- ccAGG-GUGa----GUGa-GgACUUGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 96379 0.67 0.937814
Target:  5'- --aCCCGgUCGCgCCcGAGCAggCGGCg -3'
miRNA:   3'- ccaGGGUgAGUGaGGaCUUGUa-GCCG- -5'
25514 3' -53.3 NC_005337.1 + 95639 0.67 0.932803
Target:  5'- cGGgCCCGCUCGCcaUCUUGAACA-C-GCa -3'
miRNA:   3'- -CCaGGGUGAGUG--AGGACUUGUaGcCG- -5'
25514 3' -53.3 NC_005337.1 + 94017 0.7 0.829027
Target:  5'- cGUCCUACUguCUCgUGGugGcgCGGCg -3'
miRNA:   3'- cCAGGGUGAguGAGgACUugUa-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.