Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25514 | 3' | -53.3 | NC_005337.1 | + | 126255 | 1.14 | 0.002557 |
Target: 5'- aGGUCCCACUCACUCCUGAACAUCGGCc -3' miRNA: 3'- -CCAGGGUGAGUGAGGACUUGUAGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 111388 | 0.66 | 0.966159 |
Target: 5'- cGGUgCCGCUCGCgcg-GcACGUCGGa -3' miRNA: 3'- -CCAgGGUGAGUGaggaCuUGUAGCCg -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 41837 | 0.66 | 0.969292 |
Target: 5'- uGUCCgGCUC-CUCCU---CGUCGGg -3' miRNA: 3'- cCAGGgUGAGuGAGGAcuuGUAGCCg -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 131771 | 0.66 | 0.972214 |
Target: 5'- aGGUgCgGCa-GCUgCUGAGCcUCGGCg -3' miRNA: 3'- -CCAgGgUGagUGAgGACUUGuAGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 94017 | 0.7 | 0.829027 |
Target: 5'- cGUCCUACUguCUCgUGGugGcgCGGCg -3' miRNA: 3'- cCAGGGUGAguGAGgACUugUa-GCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 115206 | 0.7 | 0.845736 |
Target: 5'- cGGUgCCGCUgcgggCGCUgCUGAAgAUgGGCg -3' miRNA: 3'- -CCAgGGUGA-----GUGAgGACUUgUAgCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 86750 | 0.69 | 0.891524 |
Target: 5'- aGGUCCCGCUCcggcacgauggccauCUCCggcguccgcacGGGCggCGGCa -3' miRNA: 3'- -CCAGGGUGAGu--------------GAGGa----------CUUGuaGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 91787 | 0.68 | 0.904048 |
Target: 5'- aGUUCCGCgCGCUCCacGGCggCGGCg -3' miRNA: 3'- cCAGGGUGaGUGAGGacUUGuaGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 101788 | 0.67 | 0.932803 |
Target: 5'- cGGgauccCCCGCUCaACUCC-GGGCuUCGGa -3' miRNA: 3'- -CCa----GGGUGAG-UGAGGaCUUGuAGCCg -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 88388 | 0.66 | 0.966159 |
Target: 5'- cGUCCCACgcgCAgUCCgaguACAU-GGCg -3' miRNA: 3'- cCAGGGUGa--GUgAGGacu-UGUAgCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 10126 | 0.67 | 0.944416 |
Target: 5'- cGUCgCuCUCGCcgUCCUGGGCGuccaugucaucuuccUCGGCg -3' miRNA: 3'- cCAGgGuGAGUG--AGGACUUGU---------------AGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 42719 | 0.68 | 0.922041 |
Target: 5'- --aCCUGCUCauGCUgCUGAACAUCcGCg -3' miRNA: 3'- ccaGGGUGAG--UGAgGACUUGUAGcCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 10600 | 0.72 | 0.715701 |
Target: 5'- cGGUCCCGC-CGCggggGAGCggCGGCg -3' miRNA: 3'- -CCAGGGUGaGUGaggaCUUGuaGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 131331 | 0.66 | 0.955421 |
Target: 5'- --aCCgCGCUCAUgcgcgCCgUGcGCGUCGGCa -3' miRNA: 3'- ccaGG-GUGAGUGa----GG-ACuUGUAGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 103680 | 0.7 | 0.820391 |
Target: 5'- -cUCCCGCUCGCagcugcaaugccUCCUGGcGCA-CGGCc -3' miRNA: 3'- ccAGGGUGAGUG------------AGGACU-UGUaGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 117374 | 0.68 | 0.909062 |
Target: 5'- uGGUCCagaaga-UCCUGGACcUCGGCg -3' miRNA: 3'- -CCAGGgugagugAGGACUUGuAGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 131362 | 0.66 | 0.959228 |
Target: 5'- -cUCCgGCgacgcCGCUCCUGGACGU-GGUc -3' miRNA: 3'- ccAGGgUGa----GUGAGGACUUGUAgCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 53902 | 0.66 | 0.969292 |
Target: 5'- cGGcCCCGCUgGCgguggagaCgCUGGACGgugCGGCc -3' miRNA: 3'- -CCaGGGUGAgUGa-------G-GACUUGUa--GCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 92663 | 0.7 | 0.823867 |
Target: 5'- aGGUgCUgcacugcuucgacguGCUCACcuUCCUGGGCggCGGCg -3' miRNA: 3'- -CCAgGG---------------UGAGUG--AGGACUUGuaGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 133381 | 0.69 | 0.883882 |
Target: 5'- cGUCgCGCUCggGCUCCUGc---UCGGCg -3' miRNA: 3'- cCAGgGUGAG--UGAGGACuuguAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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