miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 5' -55.6 NC_005337.1 + 114554 0.67 0.797703
Target:  5'- -gGCCAUcGUggaggCGCggccGCAGaugGCGCCGGCg -3'
miRNA:   3'- aaCGGUA-CAa----GCG----CGUCa--CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 42621 0.67 0.797703
Target:  5'- -cGCCAUGUgCGgcacCGCGGUG-GUCGACg -3'
miRNA:   3'- aaCGGUACAaGC----GCGUCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 84141 0.67 0.797703
Target:  5'- -aGUC-UGUccacCGCGCAGaugcGCGCCAGCg -3'
miRNA:   3'- aaCGGuACAa---GCGCGUCa---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 39438 0.67 0.797703
Target:  5'- -cGCUcgGgcCGCGCucGGUGCGCaCGAUg -3'
miRNA:   3'- aaCGGuaCaaGCGCG--UCACGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 95924 0.67 0.792082
Target:  5'- -cGUCGUGUgcgugaUGCGCAGcgcguacucgcccgGCGCCGGCg -3'
miRNA:   3'- aaCGGUACAa-----GCGCGUCa-------------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 46002 0.67 0.788304
Target:  5'- -gGCCAUGUccucCGCGgcgcccgcCGGcGCGCCGGCa -3'
miRNA:   3'- aaCGGUACAa---GCGC--------GUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 90625 0.67 0.782591
Target:  5'- gUGCC-UGUucacccguuccuugaUCGCGCGGcgGCGCUGAUc -3'
miRNA:   3'- aACGGuACA---------------AGCGCGUCa-CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 17092 0.67 0.777791
Target:  5'- -aGCUA-GUgaauaucUCGCGCgAGUGCGcCCGGCa -3'
miRNA:   3'- aaCGGUaCA-------AGCGCG-UCACGC-GGUUG- -5'
25514 5' -55.6 NC_005337.1 + 101243 0.68 0.769062
Target:  5'- -cGCgCGUGcUCGCGCuGgacgGCGCgGACg -3'
miRNA:   3'- aaCG-GUACaAGCGCGuCa---CGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 123569 0.68 0.769062
Target:  5'- -gGCCGUGgaCGCGgAGUGcCGCUgcuGCg -3'
miRNA:   3'- aaCGGUACaaGCGCgUCAC-GCGGu--UG- -5'
25514 5' -55.6 NC_005337.1 + 80427 0.68 0.769062
Target:  5'- -aGCCGUccgcggCGCGCA--GCGCCAGCc -3'
miRNA:   3'- aaCGGUAcaa---GCGCGUcaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 57148 0.68 0.759239
Target:  5'- -cGCCGUGga-GCGCAGcacccgGCGCguGCu -3'
miRNA:   3'- aaCGGUACaagCGCGUCa-----CGCGguUG- -5'
25514 5' -55.6 NC_005337.1 + 127973 0.68 0.759239
Target:  5'- -cGCCAUG--CGCGaGGUGCGCUgcAACg -3'
miRNA:   3'- aaCGGUACaaGCGCgUCACGCGG--UUG- -5'
25514 5' -55.6 NC_005337.1 + 98778 0.68 0.75726
Target:  5'- -cGCCGUGgaccgguacaaCGCGCucucgAGUGgGCCAACc -3'
miRNA:   3'- aaCGGUACaa---------GCGCG-----UCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 53595 0.68 0.749296
Target:  5'- -cGCaCAUGcgCGCGCGGaagcGCGCCGcGCa -3'
miRNA:   3'- aaCG-GUACaaGCGCGUCa---CGCGGU-UG- -5'
25514 5' -55.6 NC_005337.1 + 23762 0.68 0.749296
Target:  5'- -cGCCGUGUUcaccaCGCGCGa-GCGCCAc- -3'
miRNA:   3'- aaCGGUACAA-----GCGCGUcaCGCGGUug -5'
25514 5' -55.6 NC_005337.1 + 19107 0.68 0.739242
Target:  5'- -cGCCGgcgUC-CGCGG-GCGCCGGCa -3'
miRNA:   3'- aaCGGUacaAGcGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 132099 0.68 0.739242
Target:  5'- -cGUCGUGgacacgcuggUCGCGCuGgGUGCCGACg -3'
miRNA:   3'- aaCGGUACa---------AGCGCGuCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 12034 0.68 0.729088
Target:  5'- aUGCCGgucaucggCGUGCGGUcguccggcgugcGCGCCGACa -3'
miRNA:   3'- aACGGUacaa----GCGCGUCA------------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 100381 0.68 0.729088
Target:  5'- -cGCCGccUUCGUGCaucgAGUGCGCgGGCg -3'
miRNA:   3'- aaCGGUacAAGCGCG----UCACGCGgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.