miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 5' -55.6 NC_005337.1 + 68510 0.66 0.850405
Target:  5'- -gGCCGUGggUGCGCcc-GCGCuCGGCu -3'
miRNA:   3'- aaCGGUACaaGCGCGucaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 5489 0.66 0.84545
Target:  5'- -cGcCCAUGaUCGCGCgcacccgugcuaccaGGUucgcGCGCCGGCg -3'
miRNA:   3'- aaC-GGUACaAGCGCG---------------UCA----CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 126129 0.66 0.842105
Target:  5'- -cGCCGUG--CGCGCGGccaUGC-CCGGCg -3'
miRNA:   3'- aaCGGUACaaGCGCGUC---ACGcGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 95325 0.66 0.842105
Target:  5'- -cGCCGaucgGUgcgCGuCGCAGUaGCGCCGGa -3'
miRNA:   3'- aaCGGUa---CAa--GC-GCGUCA-CGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 57480 0.66 0.842105
Target:  5'- -gGgCGUGaaCgGCGCGGUGCGCCu-- -3'
miRNA:   3'- aaCgGUACaaG-CGCGUCACGCGGuug -5'
25514 5' -55.6 NC_005337.1 + 117247 0.66 0.833601
Target:  5'- cUGCCGUGcgccUUCGCGCGGcccGCagaccCCGACg -3'
miRNA:   3'- aACGGUAC----AAGCGCGUCa--CGc----GGUUG- -5'
25514 5' -55.6 NC_005337.1 + 67926 0.66 0.833601
Target:  5'- gUGCCGcgGUggUCGCGCuccacgagcacGUGuCGCCAGCc -3'
miRNA:   3'- aACGGUa-CA--AGCGCGu----------CAC-GCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 74486 0.66 0.833601
Target:  5'- -gGCCucGUGgUCGCGUGccgGCGCCGGCu -3'
miRNA:   3'- aaCGG--UACaAGCGCGUca-CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 122451 0.66 0.833601
Target:  5'- -cGCCGacuucaUCGCGCAGUGCGa-GGCa -3'
miRNA:   3'- aaCGGUaca---AGCGCGUCACGCggUUG- -5'
25514 5' -55.6 NC_005337.1 + 105532 0.66 0.83274
Target:  5'- -cGCCAUGgaCGCGacuggaaCGGUgGCGCCAc- -3'
miRNA:   3'- aaCGGUACaaGCGC-------GUCA-CGCGGUug -5'
25514 5' -55.6 NC_005337.1 + 80143 0.67 0.8249
Target:  5'- -aGCCAUG--CGCGCGGcGCgGCCGucGCg -3'
miRNA:   3'- aaCGGUACaaGCGCGUCaCG-CGGU--UG- -5'
25514 5' -55.6 NC_005337.1 + 46366 0.67 0.8249
Target:  5'- -cGCCG-----GCGCAGgcGCGCCAGCg -3'
miRNA:   3'- aaCGGUacaagCGCGUCa-CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 69137 0.67 0.822253
Target:  5'- -cGCCAUGUacugggagcgcgucUCGCGC-GUGCuGCugCAGCa -3'
miRNA:   3'- aaCGGUACA--------------AGCGCGuCACG-CG--GUUG- -5'
25514 5' -55.6 NC_005337.1 + 39952 0.67 0.816011
Target:  5'- -cGCC----UCGCGCGG-GCGCuCGACg -3'
miRNA:   3'- aaCGGuacaAGCGCGUCaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 3373 0.67 0.816011
Target:  5'- aUGUCGUcGUUCgugggcgagaaGCGCGcGUGCGCCAu- -3'
miRNA:   3'- aACGGUA-CAAG-----------CGCGU-CACGCGGUug -5'
25514 5' -55.6 NC_005337.1 + 2164 0.67 0.806942
Target:  5'- -aGCC-UGc-CGCGCAcgGCGCCGACg -3'
miRNA:   3'- aaCGGuACaaGCGCGUcaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 2485 0.67 0.806942
Target:  5'- -gGCUAUGUUCGgGUAc-GCGCgCAGCa -3'
miRNA:   3'- aaCGGUACAAGCgCGUcaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 47320 0.67 0.806942
Target:  5'- -gGUCAUGUUCgagGCGCGcGUGgucauggaCGCCGACg -3'
miRNA:   3'- aaCGGUACAAG---CGCGU-CAC--------GCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 42621 0.67 0.797703
Target:  5'- -cGCCAUGUgCGgcacCGCGGUG-GUCGACg -3'
miRNA:   3'- aaCGGUACAaGC----GCGUCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 114554 0.67 0.797703
Target:  5'- -gGCCAUcGUggaggCGCggccGCAGaugGCGCCGGCg -3'
miRNA:   3'- aaCGGUA-CAa----GCG----CGUCa--CGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.