miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 5' -55.6 NC_005337.1 + 38830 0.66 0.850405
Target:  5'- -cGCCGcgcUGgaCGCGUAcgccggccuGUGCGCCAAg -3'
miRNA:   3'- aaCGGU---ACaaGCGCGU---------CACGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 39258 0.7 0.613654
Target:  5'- -cGCCGUcccgccGUUCGCGguGgccGCGCUGGCg -3'
miRNA:   3'- aaCGGUA------CAAGCGCguCa--CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 39376 0.73 0.460501
Target:  5'- -cGCCAccgUgGCGCAGUGCGCCu-- -3'
miRNA:   3'- aaCGGUacaAgCGCGUCACGCGGuug -5'
25514 5' -55.6 NC_005337.1 + 39438 0.67 0.797703
Target:  5'- -cGCUcgGgcCGCGCucGGUGCGCaCGAUg -3'
miRNA:   3'- aaCGGuaCaaGCGCG--UCACGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 39952 0.67 0.816011
Target:  5'- -cGCC----UCGCGCGG-GCGCuCGACg -3'
miRNA:   3'- aaCGGuacaAGCGCGUCaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 40033 0.76 0.337779
Target:  5'- aUGCUAgcgGgcgUCGuCGCGGUGCGCCGAa -3'
miRNA:   3'- aACGGUa--Ca--AGC-GCGUCACGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 42398 0.69 0.687673
Target:  5'- -cGCCGcgg-CGCGCGgccucgcuGUGCGCCGGCu -3'
miRNA:   3'- aaCGGUacaaGCGCGU--------CACGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 42621 0.67 0.797703
Target:  5'- -cGCCAUGUgCGgcacCGCGGUG-GUCGACg -3'
miRNA:   3'- aaCGGUACAaGC----GCGUCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 45883 0.66 0.873999
Target:  5'- -cGCCAUGUacucggacugCGCGUGG-GCGUgGGCg -3'
miRNA:   3'- aaCGGUACAa---------GCGCGUCaCGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 46002 0.67 0.788304
Target:  5'- -gGCCAUGUccucCGCGgcgcccgcCGGcGCGCCGGCa -3'
miRNA:   3'- aaCGGUACAa---GCGC--------GUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 46366 0.67 0.8249
Target:  5'- -cGCCG-----GCGCAGgcGCGCCAGCg -3'
miRNA:   3'- aaCGGUacaagCGCGUCa-CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 46452 0.7 0.634861
Target:  5'- -cGCgAUcugCGCGCGGcGCGCCGGCg -3'
miRNA:   3'- aaCGgUAcaaGCGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 47320 0.67 0.806942
Target:  5'- -gGUCAUGUUCgagGCGCGcGUGgucauggaCGCCGACg -3'
miRNA:   3'- aaCGGUACAAG---CGCGU-CAC--------GCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 47957 0.79 0.201452
Target:  5'- -cGCCAUGUUCGCGCgcgAGUgcgGCGCgGACg -3'
miRNA:   3'- aaCGGUACAAGCGCG---UCA---CGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 48670 0.75 0.353784
Target:  5'- -aGCuCAUGgagaucgUCGCGCAGauccgggGCGCCAACg -3'
miRNA:   3'- aaCG-GUACa------AGCGCGUCa------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 52135 0.69 0.687673
Target:  5'- -gGCCuucguggacgcGUGUcgCGCGCucaUGCGCCAGCg -3'
miRNA:   3'- aaCGG-----------UACAa-GCGCGuc-ACGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 52506 0.73 0.449059
Target:  5'- -cGCCAUGcgcaaccugcaCGCGCAGgagaacgGCGCCGGCg -3'
miRNA:   3'- aaCGGUACaa---------GCGCGUCa------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 53595 0.68 0.749296
Target:  5'- -cGCaCAUGcgCGCGCGGaagcGCGCCGcGCa -3'
miRNA:   3'- aaCG-GUACaaGCGCGUCa---CGCGGU-UG- -5'
25514 5' -55.6 NC_005337.1 + 53651 0.7 0.613654
Target:  5'- -cGCCGUGaUCGCcgcgauGCAGcGCGUCGGCg -3'
miRNA:   3'- aaCGGUACaAGCG------CGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 57086 0.72 0.499702
Target:  5'- -cGCCcgcUGUUCGCcauccGCGGgugGCGCCGGCa -3'
miRNA:   3'- aaCGGu--ACAAGCG-----CGUCa--CGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.