miRNA display CGI


Results 21 - 40 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 5' -55.6 NC_005337.1 + 39258 0.7 0.613654
Target:  5'- -cGCCGUcccgccGUUCGCGguGgccGCGCUGGCg -3'
miRNA:   3'- aaCGGUA------CAAGCGCguCa--CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 70879 0.7 0.624254
Target:  5'- -cGCCAUGUccagCGCGCucugcgGCGCCAc- -3'
miRNA:   3'- aaCGGUACAa---GCGCGuca---CGCGGUug -5'
25514 5' -55.6 NC_005337.1 + 25201 0.7 0.624254
Target:  5'- -gGCCAUGUucgUCGCGCugcagauGUGgGCCGu- -3'
miRNA:   3'- aaCGGUACA---AGCGCGu------CACgCGGUug -5'
25514 5' -55.6 NC_005337.1 + 46452 0.7 0.634861
Target:  5'- -cGCgAUcugCGCGCGGcGCGCCGGCg -3'
miRNA:   3'- aaCGgUAcaaGCGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 100675 0.7 0.645464
Target:  5'- -cGCCGcGUUCGCGCcGcGCGCgCGGCc -3'
miRNA:   3'- aaCGGUaCAAGCGCGuCaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 95397 0.7 0.645464
Target:  5'- -cGCag-GUaggUCGCGguGUGCGCCcGCa -3'
miRNA:   3'- aaCGguaCA---AGCGCguCACGCGGuUG- -5'
25514 5' -55.6 NC_005337.1 + 13833 0.7 0.656057
Target:  5'- -gGaCCAUGUggggCGCGCAGUcCGCCGc- -3'
miRNA:   3'- aaC-GGUACAa---GCGCGUCAcGCGGUug -5'
25514 5' -55.6 NC_005337.1 + 64828 0.69 0.677171
Target:  5'- cUGcCCAUGUgcgCGCGCgAGcugGCGCCGGa -3'
miRNA:   3'- aAC-GGUACAa--GCGCG-UCa--CGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 124782 0.69 0.687673
Target:  5'- -gGCCAUcgagcucugCGCGCAGaUGgGCCGGCg -3'
miRNA:   3'- aaCGGUAcaa------GCGCGUC-ACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 42398 0.69 0.687673
Target:  5'- -cGCCGcgg-CGCGCGgccucgcuGUGCGCCGGCu -3'
miRNA:   3'- aaCGGUacaaGCGCGU--------CACGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 52135 0.69 0.687673
Target:  5'- -gGCCuucguggacgcGUGUcgCGCGCucaUGCGCCAGCg -3'
miRNA:   3'- aaCGG-----------UACAa-GCGCGuc-ACGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 23086 0.69 0.687673
Target:  5'- gUGCCcgGcaucgugCGCGCGGUG-GUCAGCa -3'
miRNA:   3'- aACGGuaCaa-----GCGCGUCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 73447 0.69 0.718844
Target:  5'- -cGCCAguucUUCGCGCGGcgGUGCCGc- -3'
miRNA:   3'- aaCGGUac--AAGCGCGUCa-CGCGGUug -5'
25514 5' -55.6 NC_005337.1 + 774 0.69 0.718844
Target:  5'- -gGCCAUGUgcugCGCGC----CGCCGACg -3'
miRNA:   3'- aaCGGUACAa---GCGCGucacGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 774 0.69 0.718844
Target:  5'- -gGCCAUGUgcugCGCGC----CGCCGACg -3'
miRNA:   3'- aaCGGUACAa---GCGCGucacGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 6760 0.69 0.718844
Target:  5'- -cGCCAUGUagugcaGCGCGGUGUucccGCCggUg -3'
miRNA:   3'- aaCGGUACAag----CGCGUCACG----CGGuuG- -5'
25514 5' -55.6 NC_005337.1 + 12034 0.68 0.729088
Target:  5'- aUGCCGgucaucggCGUGCGGUcguccggcgugcGCGCCGACa -3'
miRNA:   3'- aACGGUacaa----GCGCGUCA------------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 100381 0.68 0.729088
Target:  5'- -cGCCGccUUCGUGCaucgAGUGCGCgGGCg -3'
miRNA:   3'- aaCGGUacAAGCGCG----UCACGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 19107 0.68 0.739242
Target:  5'- -cGCCGgcgUC-CGCGG-GCGCCGGCa -3'
miRNA:   3'- aaCGGUacaAGcGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 132099 0.68 0.739242
Target:  5'- -cGUCGUGgacacgcuggUCGCGCuGgGUGCCGACg -3'
miRNA:   3'- aaCGGUACa---------AGCGCGuCaCGCGGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.