miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 5' -55.6 NC_005337.1 + 126294 1.08 0.002361
Target:  5'- uUUGCCAUGUUCGCGCAGUGCGCCAACg -3'
miRNA:   3'- -AACGGUACAAGCGCGUCACGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 47957 0.79 0.201452
Target:  5'- -cGCCAUGUUCGCGCgcgAGUgcgGCGCgGACg -3'
miRNA:   3'- aaCGGUACAAGCGCG---UCA---CGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 87267 0.76 0.299384
Target:  5'- aUGCCcaggcagauggagGUGUUCGUGCGGUGCGCgauCGGCu -3'
miRNA:   3'- aACGG-------------UACAAGCGCGUCACGCG---GUUG- -5'
25514 5' -55.6 NC_005337.1 + 40033 0.76 0.337779
Target:  5'- aUGCUAgcgGgcgUCGuCGCGGUGCGCCGAa -3'
miRNA:   3'- aACGGUa--Ca--AGC-GCGUCACGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 48670 0.75 0.353784
Target:  5'- -aGCuCAUGgagaucgUCGCGCAGauccgggGCGCCAACg -3'
miRNA:   3'- aaCG-GUACa------AGCGCGUCa------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 130521 0.74 0.419339
Target:  5'- -gGUCAUGgaguuccuggugCGCGCGG-GCGCCAACg -3'
miRNA:   3'- aaCGGUACaa----------GCGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 6891 0.74 0.432196
Target:  5'- -cGuCCAUGUcgcgcgCGCGCGGguccGCGCCGGCg -3'
miRNA:   3'- aaC-GGUACAa-----GCGCGUCa---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 59879 0.74 0.432196
Target:  5'- gUGCCAgagccccggagaUGUacgucUCGCGCAGcUGCGCCAu- -3'
miRNA:   3'- aACGGU------------ACA-----AGCGCGUC-ACGCGGUug -5'
25514 5' -55.6 NC_005337.1 + 52506 0.73 0.449059
Target:  5'- -cGCCAUGcgcaaccugcaCGCGCAGgagaacgGCGCCGGCg -3'
miRNA:   3'- aaCGGUACaa---------GCGCGUCa------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 110359 0.73 0.450955
Target:  5'- cUGCCGcGggCGCGCGG-GCGCgCGGCa -3'
miRNA:   3'- aACGGUaCaaGCGCGUCaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 39376 0.73 0.460501
Target:  5'- -cGCCAccgUgGCGCAGUGCGCCu-- -3'
miRNA:   3'- aaCGGUacaAgCGCGUCACGCGGuug -5'
25514 5' -55.6 NC_005337.1 + 57086 0.72 0.499702
Target:  5'- -cGCCcgcUGUUCGCcauccGCGGgugGCGCCGGCa -3'
miRNA:   3'- aaCGGu--ACAAGCG-----CGUCa--CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 10445 0.72 0.509735
Target:  5'- -gGCgGUGcgCGCGUcGUGCGCCAGg -3'
miRNA:   3'- aaCGgUACaaGCGCGuCACGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 86254 0.72 0.530047
Target:  5'- -cGCCGUGUUCGUgcuccGCAGcGCGCgGAUc -3'
miRNA:   3'- aaCGGUACAAGCG-----CGUCaCGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 69146 0.72 0.540314
Target:  5'- -gGCCGccUUCGCGgcCAGUGCGaCCAGCa -3'
miRNA:   3'- aaCGGUacAAGCGC--GUCACGC-GGUUG- -5'
25514 5' -55.6 NC_005337.1 + 121679 0.72 0.540314
Target:  5'- cUGCuCAUc--CGCGCGG-GCGCCAACg -3'
miRNA:   3'- aACG-GUAcaaGCGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 97998 0.71 0.56104
Target:  5'- -gGCCGcGUUCGCGCAGcggcuggucGCGCUGGCc -3'
miRNA:   3'- aaCGGUaCAAGCGCGUCa--------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 125519 0.71 0.571486
Target:  5'- gUGCgGcUGcUCGUGCGGUacgGCGCCGACa -3'
miRNA:   3'- aACGgU-ACaAGCGCGUCA---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 67105 0.71 0.60307
Target:  5'- -cGCCGUGagcUCGCGCAGguUGCGCaucACg -3'
miRNA:   3'- aaCGGUACa--AGCGCGUC--ACGCGgu-UG- -5'
25514 5' -55.6 NC_005337.1 + 53651 0.7 0.613654
Target:  5'- -cGCCGUGaUCGCcgcgauGCAGcGCGUCGGCg -3'
miRNA:   3'- aaCGGUACaAGCG------CGUCaCGCGGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.