miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 5' -55.6 NC_005337.1 + 6760 0.69 0.718844
Target:  5'- -cGCCAUGUagugcaGCGCGGUGUucccGCCggUg -3'
miRNA:   3'- aaCGGUACAag----CGCGUCACG----CGGuuG- -5'
25514 5' -55.6 NC_005337.1 + 46452 0.7 0.634861
Target:  5'- -cGCgAUcugCGCGCGGcGCGCCGGCg -3'
miRNA:   3'- aaCGgUAcaaGCGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 100675 0.7 0.645464
Target:  5'- -cGCCGcGUUCGCGCcGcGCGCgCGGCc -3'
miRNA:   3'- aaCGGUaCAAGCGCGuCaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 64828 0.69 0.677171
Target:  5'- cUGcCCAUGUgcgCGCGCgAGcugGCGCCGGa -3'
miRNA:   3'- aAC-GGUACAa--GCGCG-UCa--CGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 124782 0.69 0.687673
Target:  5'- -gGCCAUcgagcucugCGCGCAGaUGgGCCGGCg -3'
miRNA:   3'- aaCGGUAcaa------GCGCGUC-ACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 23086 0.69 0.687673
Target:  5'- gUGCCcgGcaucgugCGCGCGGUG-GUCAGCa -3'
miRNA:   3'- aACGGuaCaa-----GCGCGUCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 42398 0.69 0.687673
Target:  5'- -cGCCGcgg-CGCGCGgccucgcuGUGCGCCGGCu -3'
miRNA:   3'- aaCGGUacaaGCGCGU--------CACGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 52135 0.69 0.687673
Target:  5'- -gGCCuucguggacgcGUGUcgCGCGCucaUGCGCCAGCg -3'
miRNA:   3'- aaCGG-----------UACAa-GCGCGuc-ACGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 774 0.69 0.718844
Target:  5'- -gGCCAUGUgcugCGCGC----CGCCGACg -3'
miRNA:   3'- aaCGGUACAa---GCGCGucacGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 70879 0.7 0.624254
Target:  5'- -cGCCAUGUccagCGCGCucugcgGCGCCAc- -3'
miRNA:   3'- aaCGGUACAa---GCGCGuca---CGCGGUug -5'
25514 5' -55.6 NC_005337.1 + 53651 0.7 0.613654
Target:  5'- -cGCCGUGaUCGCcgcgauGCAGcGCGUCGGCg -3'
miRNA:   3'- aaCGGUACaAGCG------CGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 125519 0.71 0.571486
Target:  5'- gUGCgGcUGcUCGUGCGGUacgGCGCCGACa -3'
miRNA:   3'- aACGgU-ACaAGCGCGUCA---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 40033 0.76 0.337779
Target:  5'- aUGCUAgcgGgcgUCGuCGCGGUGCGCCGAa -3'
miRNA:   3'- aACGGUa--Ca--AGC-GCGUCACGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 6891 0.74 0.432196
Target:  5'- -cGuCCAUGUcgcgcgCGCGCGGguccGCGCCGGCg -3'
miRNA:   3'- aaC-GGUACAa-----GCGCGUCa---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 59879 0.74 0.432196
Target:  5'- gUGCCAgagccccggagaUGUacgucUCGCGCAGcUGCGCCAu- -3'
miRNA:   3'- aACGGU------------ACA-----AGCGCGUC-ACGCGGUug -5'
25514 5' -55.6 NC_005337.1 + 110359 0.73 0.450955
Target:  5'- cUGCCGcGggCGCGCGG-GCGCgCGGCa -3'
miRNA:   3'- aACGGUaCaaGCGCGUCaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 39376 0.73 0.460501
Target:  5'- -cGCCAccgUgGCGCAGUGCGCCu-- -3'
miRNA:   3'- aaCGGUacaAgCGCGUCACGCGGuug -5'
25514 5' -55.6 NC_005337.1 + 10445 0.72 0.509735
Target:  5'- -gGCgGUGcgCGCGUcGUGCGCCAGg -3'
miRNA:   3'- aaCGgUACaaGCGCGuCACGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 121679 0.72 0.540314
Target:  5'- cUGCuCAUc--CGCGCGG-GCGCCAACg -3'
miRNA:   3'- aACG-GUAcaaGCGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 97998 0.71 0.56104
Target:  5'- -gGCCGcGUUCGCGCAGcggcuggucGCGCUGGCc -3'
miRNA:   3'- aaCGGUaCAAGCGCGUCa--------CGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.