miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 5' -55.6 NC_005337.1 + 122451 0.66 0.833601
Target:  5'- -cGCCGacuucaUCGCGCAGUGCGa-GGCa -3'
miRNA:   3'- aaCGGUaca---AGCGCGUCACGCggUUG- -5'
25514 5' -55.6 NC_005337.1 + 57480 0.66 0.842105
Target:  5'- -gGgCGUGaaCgGCGCGGUGCGCCu-- -3'
miRNA:   3'- aaCgGUACaaG-CGCGUCACGCGGuug -5'
25514 5' -55.6 NC_005337.1 + 132102 0.66 0.866358
Target:  5'- -cGCCGUGcgcgUCgGCGCcGUGCG-CGGCa -3'
miRNA:   3'- aaCGGUACa---AG-CGCGuCACGCgGUUG- -5'
25514 5' -55.6 NC_005337.1 + 34800 0.66 0.858491
Target:  5'- -cGCCAUcugCGCGUcgcgGGUG-GCCAGCg -3'
miRNA:   3'- aaCGGUAcaaGCGCG----UCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 67926 0.66 0.833601
Target:  5'- gUGCCGcgGUggUCGCGCuccacgagcacGUGuCGCCAGCc -3'
miRNA:   3'- aACGGUa-CA--AGCGCGu----------CAC-GCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 74486 0.66 0.833601
Target:  5'- -gGCCucGUGgUCGCGUGccgGCGCCGGCu -3'
miRNA:   3'- aaCGG--UACaAGCGCGUca-CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 95325 0.66 0.842105
Target:  5'- -cGCCGaucgGUgcgCGuCGCAGUaGCGCCGGa -3'
miRNA:   3'- aaCGGUa---CAa--GC-GCGUCA-CGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 126129 0.66 0.842105
Target:  5'- -cGCCGUG--CGCGCGGccaUGC-CCGGCg -3'
miRNA:   3'- aaCGGUACaaGCGCGUC---ACGcGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 14605 0.66 0.850405
Target:  5'- -gGCCAUGUUCcccgaguacCGCAGUaucGCGUUGACg -3'
miRNA:   3'- aaCGGUACAAGc--------GCGUCA---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 128039 0.66 0.866358
Target:  5'- -gGCCAaGgcCGUGCAcGUGC-CCAACg -3'
miRNA:   3'- aaCGGUaCaaGCGCGU-CACGcGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 105532 0.66 0.83274
Target:  5'- -cGCCAUGgaCGCGacuggaaCGGUgGCGCCAc- -3'
miRNA:   3'- aaCGGUACaaGCGC-------GUCA-CGCGGUug -5'
25514 5' -55.6 NC_005337.1 + 45883 0.66 0.873999
Target:  5'- -cGCCAUGUacucggacugCGCGUGG-GCGUgGGCg -3'
miRNA:   3'- aaCGGUACAa---------GCGCGUCaCGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 21170 0.66 0.858491
Target:  5'- -cGCCGUucgUCGCGCGGaccUGCGCgcGCa -3'
miRNA:   3'- aaCGGUAca-AGCGCGUC---ACGCGguUG- -5'
25514 5' -55.6 NC_005337.1 + 77760 0.66 0.858491
Target:  5'- -gGCCGUcUUgGCGCGGU-CGCgGACg -3'
miRNA:   3'- aaCGGUAcAAgCGCGUCAcGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 68732 0.66 0.866358
Target:  5'- -cGcCCGUGcugCGCaCAGUGCGCCuccAGCa -3'
miRNA:   3'- aaC-GGUACaa-GCGcGUCACGCGG---UUG- -5'
25514 5' -55.6 NC_005337.1 + 97240 0.66 0.866358
Target:  5'- -cGCCAacgacgaguucUG-UCGgGCGGUGaGCCGGCg -3'
miRNA:   3'- aaCGGU-----------ACaAGCgCGUCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 62755 0.66 0.858491
Target:  5'- -gGCCGUGUucgggUCGCGCAuGUaCGCCc-- -3'
miRNA:   3'- aaCGGUACA-----AGCGCGU-CAcGCGGuug -5'
25514 5' -55.6 NC_005337.1 + 76397 0.66 0.873999
Target:  5'- --aCCGUG--CGCGCGGgGCGCUGGCg -3'
miRNA:   3'- aacGGUACaaGCGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 117247 0.66 0.833601
Target:  5'- cUGCCGUGcgccUUCGCGCGGcccGCagaccCCGACg -3'
miRNA:   3'- aACGGUAC----AAGCGCGUCa--CGc----GGUUG- -5'
25514 5' -55.6 NC_005337.1 + 128309 0.66 0.873999
Target:  5'- -cGCCGucUGcUCGCGCGcgGCGCgAGCg -3'
miRNA:   3'- aaCGGU--ACaAGCGCGUcaCGCGgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.