miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 5' -55.6 NC_005337.1 + 774 0.69 0.718844
Target:  5'- -gGCCAUGUgcugCGCGC----CGCCGACg -3'
miRNA:   3'- aaCGGUACAa---GCGCGucacGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 774 0.69 0.718844
Target:  5'- -gGCCAUGUgcugCGCGC----CGCCGACg -3'
miRNA:   3'- aaCGGUACAa---GCGCGucacGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 1978 0.66 0.850405
Target:  5'- -cGCCGUGcaCGC-CGGgucgGCGUCAGCu -3'
miRNA:   3'- aaCGGUACaaGCGcGUCa---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 2164 0.67 0.806942
Target:  5'- -aGCC-UGc-CGCGCAcgGCGCCGACg -3'
miRNA:   3'- aaCGGuACaaGCGCGUcaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 2485 0.67 0.806942
Target:  5'- -gGCUAUGUUCGgGUAc-GCGCgCAGCa -3'
miRNA:   3'- aaCGGUACAAGCgCGUcaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 3373 0.67 0.816011
Target:  5'- aUGUCGUcGUUCgugggcgagaaGCGCGcGUGCGCCAu- -3'
miRNA:   3'- aACGGUA-CAAG-----------CGCGU-CACGCGGUug -5'
25514 5' -55.6 NC_005337.1 + 5489 0.66 0.84545
Target:  5'- -cGcCCAUGaUCGCGCgcacccgugcuaccaGGUucgcGCGCCGGCg -3'
miRNA:   3'- aaC-GGUACaAGCGCG---------------UCA----CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 6760 0.69 0.718844
Target:  5'- -cGCCAUGUagugcaGCGCGGUGUucccGCCggUg -3'
miRNA:   3'- aaCGGUACAag----CGCGUCACG----CGGuuG- -5'
25514 5' -55.6 NC_005337.1 + 6891 0.74 0.432196
Target:  5'- -cGuCCAUGUcgcgcgCGCGCGGguccGCGCCGGCg -3'
miRNA:   3'- aaC-GGUACAa-----GCGCGUCa---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 10445 0.72 0.509735
Target:  5'- -gGCgGUGcgCGCGUcGUGCGCCAGg -3'
miRNA:   3'- aaCGgUACaaGCGCGuCACGCGGUUg -5'
25514 5' -55.6 NC_005337.1 + 12034 0.68 0.729088
Target:  5'- aUGCCGgucaucggCGUGCGGUcguccggcgugcGCGCCGACa -3'
miRNA:   3'- aACGGUacaa----GCGCGUCA------------CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 13833 0.7 0.656057
Target:  5'- -gGaCCAUGUggggCGCGCAGUcCGCCGc- -3'
miRNA:   3'- aaC-GGUACAa---GCGCGUCAcGCGGUug -5'
25514 5' -55.6 NC_005337.1 + 14605 0.66 0.850405
Target:  5'- -gGCCAUGUUCcccgaguacCGCAGUaucGCGUUGACg -3'
miRNA:   3'- aaCGGUACAAGc--------GCGUCA---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 17092 0.67 0.777791
Target:  5'- -aGCUA-GUgaauaucUCGCGCgAGUGCGcCCGGCa -3'
miRNA:   3'- aaCGGUaCA-------AGCGCG-UCACGC-GGUUG- -5'
25514 5' -55.6 NC_005337.1 + 19107 0.68 0.739242
Target:  5'- -cGCCGgcgUC-CGCGG-GCGCCGGCa -3'
miRNA:   3'- aaCGGUacaAGcGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 21170 0.66 0.858491
Target:  5'- -cGCCGUucgUCGCGCGGaccUGCGCgcGCa -3'
miRNA:   3'- aaCGGUAca-AGCGCGUC---ACGCGguUG- -5'
25514 5' -55.6 NC_005337.1 + 23086 0.69 0.687673
Target:  5'- gUGCCcgGcaucgugCGCGCGGUG-GUCAGCa -3'
miRNA:   3'- aACGGuaCaa-----GCGCGUCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 23762 0.68 0.749296
Target:  5'- -cGCCGUGUUcaccaCGCGCGa-GCGCCAc- -3'
miRNA:   3'- aaCGGUACAA-----GCGCGUcaCGCGGUug -5'
25514 5' -55.6 NC_005337.1 + 25201 0.7 0.624254
Target:  5'- -gGCCAUGUucgUCGCGCugcagauGUGgGCCGu- -3'
miRNA:   3'- aaCGGUACA---AGCGCGu------CACgCGGUug -5'
25514 5' -55.6 NC_005337.1 + 34800 0.66 0.858491
Target:  5'- -cGCCAUcugCGCGUcgcgGGUG-GCCAGCg -3'
miRNA:   3'- aaCGGUAcaaGCGCG----UCACgCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.