miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 5' -55.6 NC_005337.1 + 132102 0.66 0.866358
Target:  5'- -cGCCGUGcgcgUCgGCGCcGUGCG-CGGCa -3'
miRNA:   3'- aaCGGUACa---AG-CGCGuCACGCgGUUG- -5'
25514 5' -55.6 NC_005337.1 + 132099 0.68 0.739242
Target:  5'- -cGUCGUGgacacgcuggUCGCGCuGgGUGCCGACg -3'
miRNA:   3'- aaCGGUACa---------AGCGCGuCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 130521 0.74 0.419339
Target:  5'- -gGUCAUGgaguuccuggugCGCGCGG-GCGCCAACg -3'
miRNA:   3'- aaCGGUACaa----------GCGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 128309 0.66 0.873999
Target:  5'- -cGCCGucUGcUCGCGCGcgGCGCgAGCg -3'
miRNA:   3'- aaCGGU--ACaAGCGCGUcaCGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 128039 0.66 0.866358
Target:  5'- -gGCCAaGgcCGUGCAcGUGC-CCAACg -3'
miRNA:   3'- aaCGGUaCaaGCGCGU-CACGcGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 127973 0.68 0.759239
Target:  5'- -cGCCAUG--CGCGaGGUGCGCUgcAACg -3'
miRNA:   3'- aaCGGUACaaGCGCgUCACGCGG--UUG- -5'
25514 5' -55.6 NC_005337.1 + 126294 1.08 0.002361
Target:  5'- uUUGCCAUGUUCGCGCAGUGCGCCAACg -3'
miRNA:   3'- -AACGGUACAAGCGCGUCACGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 126129 0.66 0.842105
Target:  5'- -cGCCGUG--CGCGCGGccaUGC-CCGGCg -3'
miRNA:   3'- aaCGGUACaaGCGCGUC---ACGcGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 125519 0.71 0.571486
Target:  5'- gUGCgGcUGcUCGUGCGGUacgGCGCCGACa -3'
miRNA:   3'- aACGgU-ACaAGCGCGUCA---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 124782 0.69 0.687673
Target:  5'- -gGCCAUcgagcucugCGCGCAGaUGgGCCGGCg -3'
miRNA:   3'- aaCGGUAcaa------GCGCGUC-ACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 123569 0.68 0.769062
Target:  5'- -gGCCGUGgaCGCGgAGUGcCGCUgcuGCg -3'
miRNA:   3'- aaCGGUACaaGCGCgUCAC-GCGGu--UG- -5'
25514 5' -55.6 NC_005337.1 + 122451 0.66 0.833601
Target:  5'- -cGCCGacuucaUCGCGCAGUGCGa-GGCa -3'
miRNA:   3'- aaCGGUaca---AGCGCGUCACGCggUUG- -5'
25514 5' -55.6 NC_005337.1 + 121679 0.72 0.540314
Target:  5'- cUGCuCAUc--CGCGCGG-GCGCCAACg -3'
miRNA:   3'- aACG-GUAcaaGCGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 119852 0.67 0.797703
Target:  5'- cUGCCGcacgugucuccUGgcgGCGCGGUucaGCGCCGGCg -3'
miRNA:   3'- aACGGU-----------ACaagCGCGUCA---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 117247 0.66 0.833601
Target:  5'- cUGCCGUGcgccUUCGCGCGGcccGCagaccCCGACg -3'
miRNA:   3'- aACGGUAC----AAGCGCGUCa--CGc----GGUUG- -5'
25514 5' -55.6 NC_005337.1 + 115604 0.66 0.866358
Target:  5'- cUGCCcgGgcUGCGCGGguacgccacCGCCGACc -3'
miRNA:   3'- aACGGuaCaaGCGCGUCac-------GCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 114554 0.67 0.797703
Target:  5'- -gGCCAUcGUggaggCGCggccGCAGaugGCGCCGGCg -3'
miRNA:   3'- aaCGGUA-CAa----GCG----CGUCa--CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 110359 0.73 0.450955
Target:  5'- cUGCCGcGggCGCGCGG-GCGCgCGGCa -3'
miRNA:   3'- aACGGUaCaaGCGCGUCaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 105532 0.66 0.83274
Target:  5'- -cGCCAUGgaCGCGacuggaaCGGUgGCGCCAc- -3'
miRNA:   3'- aaCGGUACaaGCGC-------GUCA-CGCGGUug -5'
25514 5' -55.6 NC_005337.1 + 101243 0.68 0.769062
Target:  5'- -cGCgCGUGcUCGCGCuGgacgGCGCgGACg -3'
miRNA:   3'- aaCG-GUACaAGCGCGuCa---CGCGgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.