miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 5' -55.6 NC_005337.1 + 76397 0.66 0.873999
Target:  5'- --aCCGUG--CGCGCGGgGCGCUGGCg -3'
miRNA:   3'- aacGGUACaaGCGCGUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 68732 0.66 0.866358
Target:  5'- -cGcCCGUGcugCGCaCAGUGCGCCuccAGCa -3'
miRNA:   3'- aaC-GGUACaa-GCGcGUCACGCGG---UUG- -5'
25514 5' -55.6 NC_005337.1 + 21170 0.66 0.858491
Target:  5'- -cGCCGUucgUCGCGCGGaccUGCGCgcGCa -3'
miRNA:   3'- aaCGGUAca-AGCGCGUC---ACGCGguUG- -5'
25514 5' -55.6 NC_005337.1 + 1978 0.66 0.850405
Target:  5'- -cGCCGUGcaCGC-CGGgucgGCGUCAGCu -3'
miRNA:   3'- aaCGGUACaaGCGcGUCa---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 92891 0.66 0.858491
Target:  5'- cUGCCcg---CGCGCGGUugccgGCGUCGGCg -3'
miRNA:   3'- aACGGuacaaGCGCGUCA-----CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 62755 0.66 0.858491
Target:  5'- -gGCCGUGUucgggUCGCGCAuGUaCGCCc-- -3'
miRNA:   3'- aaCGGUACA-----AGCGCGU-CAcGCGGuug -5'
25514 5' -55.6 NC_005337.1 + 77760 0.66 0.858491
Target:  5'- -gGCCGUcUUgGCGCGGU-CGCgGACg -3'
miRNA:   3'- aaCGGUAcAAgCGCGUCAcGCGgUUG- -5'
25514 5' -55.6 NC_005337.1 + 34800 0.66 0.858491
Target:  5'- -cGCCAUcugCGCGUcgcgGGUG-GCCAGCg -3'
miRNA:   3'- aaCGGUAcaaGCGCG----UCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 5489 0.66 0.84545
Target:  5'- -cGcCCAUGaUCGCGCgcacccgugcuaccaGGUucgcGCGCCGGCg -3'
miRNA:   3'- aaC-GGUACaAGCGCG---------------UCA----CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 68510 0.66 0.850405
Target:  5'- -gGCCGUGggUGCGCcc-GCGCuCGGCu -3'
miRNA:   3'- aaCGGUACaaGCGCGucaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 39438 0.67 0.797703
Target:  5'- -cGCUcgGgcCGCGCucGGUGCGCaCGAUg -3'
miRNA:   3'- aaCGGuaCaaGCGCG--UCACGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 42621 0.67 0.797703
Target:  5'- -cGCCAUGUgCGgcacCGCGGUG-GUCGACg -3'
miRNA:   3'- aaCGGUACAaGC----GCGUCACgCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 2164 0.67 0.806942
Target:  5'- -aGCC-UGc-CGCGCAcgGCGCCGACg -3'
miRNA:   3'- aaCGGuACaaGCGCGUcaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 2485 0.67 0.806942
Target:  5'- -gGCUAUGUUCGgGUAc-GCGCgCAGCa -3'
miRNA:   3'- aaCGGUACAAGCgCGUcaCGCG-GUUG- -5'
25514 5' -55.6 NC_005337.1 + 84141 0.67 0.797703
Target:  5'- -aGUC-UGUccacCGCGCAGaugcGCGCCAGCg -3'
miRNA:   3'- aaCGGuACAa---GCGCGUCa---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 90625 0.67 0.782591
Target:  5'- gUGCC-UGUucacccguuccuugaUCGCGCGGcgGCGCUGAUc -3'
miRNA:   3'- aACGGuACA---------------AGCGCGUCa-CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 114554 0.67 0.797703
Target:  5'- -gGCCAUcGUggaggCGCggccGCAGaugGCGCCGGCg -3'
miRNA:   3'- aaCGGUA-CAa----GCG----CGUCa--CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 119852 0.67 0.797703
Target:  5'- cUGCCGcacgugucuccUGgcgGCGCGGUucaGCGCCGGCg -3'
miRNA:   3'- aACGGU-----------ACaagCGCGUCA---CGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 46002 0.67 0.788304
Target:  5'- -gGCCAUGUccucCGCGgcgcccgcCGGcGCGCCGGCa -3'
miRNA:   3'- aaCGGUACAa---GCGC--------GUCaCGCGGUUG- -5'
25514 5' -55.6 NC_005337.1 + 95924 0.67 0.792082
Target:  5'- -cGUCGUGUgcgugaUGCGCAGcgcguacucgcccgGCGCCGGCg -3'
miRNA:   3'- aaCGGUACAa-----GCGCGUCa-------------CGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.