miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25515 3' -51.3 NC_005337.1 + 25505 0.68 0.972854
Target:  5'- --aCGUACUcGuuGAUGACGCgcuccaggcagCGGCCCa -3'
miRNA:   3'- guaGUAUGA-CugCUACUGCG-----------GCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 119550 0.68 0.969942
Target:  5'- --gCAgcgGCUGGCGAUgGGCGUCGuggagagcagguACCCg -3'
miRNA:   3'- guaGUa--UGACUGCUA-CUGCGGC------------UGGG- -5'
25515 3' -51.3 NC_005337.1 + 115223 0.68 0.969942
Target:  5'- ----cUGCUGAaGAUgGGCGCgGACCCc -3'
miRNA:   3'- guaguAUGACUgCUA-CUGCGgCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 127660 0.68 0.968091
Target:  5'- --gCGUGCcGGCGccucauccagaugGGCGCCGACCUg -3'
miRNA:   3'- guaGUAUGaCUGCua-----------CUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 57085 0.68 0.966812
Target:  5'- gAUCAcGCgcgaGACGgcGACGCUGAUCUu -3'
miRNA:   3'- gUAGUaUGa---CUGCuaCUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 47675 0.68 0.96583
Target:  5'- --gCAUGCUGGCGGgcguccgcgugcggUacGACGgCGACCCc -3'
miRNA:   3'- guaGUAUGACUGCU--------------A--CUGCgGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 26922 0.68 0.96346
Target:  5'- gGUgGUGCUGGa---GACGCCG-CCCa -3'
miRNA:   3'- gUAgUAUGACUgcuaCUGCGGCuGGG- -5'
25515 3' -51.3 NC_005337.1 + 132254 0.68 0.96346
Target:  5'- ---uGUACU--CGAUGACGCCGAUggCCg -3'
miRNA:   3'- guagUAUGAcuGCUACUGCGGCUG--GG- -5'
25515 3' -51.3 NC_005337.1 + 76110 0.69 0.956454
Target:  5'- aCAUCAUGCgcacgcgcuugcgcGCGAaGGcCGCCGAUCCg -3'
miRNA:   3'- -GUAGUAUGac------------UGCUaCU-GCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 16592 0.69 0.956061
Target:  5'- aCGUUucUGgUGAuauCGAUGACGCCGugcguGCCCg -3'
miRNA:   3'- -GUAGu-AUgACU---GCUACUGCGGC-----UGGG- -5'
25515 3' -51.3 NC_005337.1 + 24878 0.69 0.956061
Target:  5'- --cCGUGuCUGugGAcgGcACGCCaGACCCg -3'
miRNA:   3'- guaGUAU-GACugCUa-C-UGCGG-CUGGG- -5'
25515 3' -51.3 NC_005337.1 + 115438 0.69 0.952005
Target:  5'- --gCGUGCUGGCGAUaGA-GCCGGCg- -3'
miRNA:   3'- guaGUAUGACUGCUA-CUgCGGCUGgg -5'
25515 3' -51.3 NC_005337.1 + 62344 0.69 0.952005
Target:  5'- --cCAUGaUGugGAagaggagGACGCUGACCCc -3'
miRNA:   3'- guaGUAUgACugCUa------CUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 82633 0.69 0.947704
Target:  5'- -----cGCUGGCGAccgcgGAgCGCCGACCg -3'
miRNA:   3'- guaguaUGACUGCUa----CU-GCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 95903 0.69 0.947704
Target:  5'- -cUCGUGCUcGCGgcGACGgCGGCCg -3'
miRNA:   3'- guAGUAUGAcUGCuaCUGCgGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 132310 0.69 0.947704
Target:  5'- --gCGUGCacggcGGCGGagggGGCGCUGGCCCa -3'
miRNA:   3'- guaGUAUGa----CUGCUa---CUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 67842 0.69 0.947704
Target:  5'- uGUUGUugUGguaGAUGACGUCG-CCCg -3'
miRNA:   3'- gUAGUAugACug-CUACUGCGGCuGGG- -5'
25515 3' -51.3 NC_005337.1 + 7137 0.69 0.947704
Target:  5'- gAUCAgcacGCgGACGAUGucCGCCucgGACCCc -3'
miRNA:   3'- gUAGUa---UGaCUGCUACu-GCGG---CUGGG- -5'
25515 3' -51.3 NC_005337.1 + 80410 0.69 0.943157
Target:  5'- uGUC-UGCUcGCGGUGGCGUCGcuggucguGCCCg -3'
miRNA:   3'- gUAGuAUGAcUGCUACUGCGGC--------UGGG- -5'
25515 3' -51.3 NC_005337.1 + 99450 0.69 0.943157
Target:  5'- cCAUCAUGCgGGaGAUagaGGCGCUGGCCa -3'
miRNA:   3'- -GUAGUAUGaCUgCUA---CUGCGGCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.