miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25515 3' -51.3 NC_005337.1 + 74824 0.66 0.986204
Target:  5'- -cUgGUGCUGcUGAuccUGAUGCCGcACCCc -3'
miRNA:   3'- guAgUAUGACuGCU---ACUGCGGC-UGGG- -5'
25515 3' -51.3 NC_005337.1 + 50575 0.66 0.986204
Target:  5'- aCAUCGaGCaGGCGAaGaACGCC-ACCCa -3'
miRNA:   3'- -GUAGUaUGaCUGCUaC-UGCGGcUGGG- -5'
25515 3' -51.3 NC_005337.1 + 66284 0.66 0.986204
Target:  5'- ----cUGgUGGCGcacGCGCCGACCCu -3'
miRNA:   3'- guaguAUgACUGCuacUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 6994 0.66 0.986033
Target:  5'- --cCGUGCuuguccaUGGCGcgGACGuCCGcGCCCg -3'
miRNA:   3'- guaGUAUG-------ACUGCuaCUGC-GGC-UGGG- -5'
25515 3' -51.3 NC_005337.1 + 28648 0.67 0.984429
Target:  5'- --aCGaGCccGACGGUGcagaacggcACGCCGGCCCc -3'
miRNA:   3'- guaGUaUGa-CUGCUAC---------UGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 44137 0.67 0.984429
Target:  5'- --cCGUGC-GGCgGAUGACGCUGuuCCg -3'
miRNA:   3'- guaGUAUGaCUG-CUACUGCGGCugGG- -5'
25515 3' -51.3 NC_005337.1 + 2646 0.67 0.984429
Target:  5'- -----aGCgGAaGGUGGCGCCGGCCg -3'
miRNA:   3'- guaguaUGaCUgCUACUGCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 25078 0.67 0.984429
Target:  5'- uCGUCAaGCUG-CGc-GACGCCGagcuccGCCCg -3'
miRNA:   3'- -GUAGUaUGACuGCuaCUGCGGC------UGGG- -5'
25515 3' -51.3 NC_005337.1 + 83411 0.67 0.984242
Target:  5'- ---gGUGCUGAaGAUGGCGCCcacgagcaucucgGugCCg -3'
miRNA:   3'- guagUAUGACUgCUACUGCGG-------------CugGG- -5'
25515 3' -51.3 NC_005337.1 + 124015 0.67 0.982485
Target:  5'- gGUCcgggaGCUGcUGAUGugGCUGGCCa -3'
miRNA:   3'- gUAGua---UGACuGCUACugCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 7289 0.67 0.982485
Target:  5'- aGUCGUGCUgGACGuagcagugcaGUGGCGUguACCCg -3'
miRNA:   3'- gUAGUAUGA-CUGC----------UACUGCGgcUGGG- -5'
25515 3' -51.3 NC_005337.1 + 125515 0.67 0.982485
Target:  5'- gGUCGUgcgGCUGcucguGCGGUacGGCGCCGACauCCg -3'
miRNA:   3'- gUAGUA---UGAC-----UGCUA--CUGCGGCUG--GG- -5'
25515 3' -51.3 NC_005337.1 + 63402 0.67 0.982485
Target:  5'- ----cUGCUGGCGAUGACGagcuCGACg- -3'
miRNA:   3'- guaguAUGACUGCUACUGCg---GCUGgg -5'
25515 3' -51.3 NC_005337.1 + 75019 0.67 0.980364
Target:  5'- -----cGCUGACGcgcaccGUGGgGCUGGCCCc -3'
miRNA:   3'- guaguaUGACUGC------UACUgCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 127674 0.67 0.978058
Target:  5'- -cUCGaGCUGAUGcUGACcgucgGCCGGCUCg -3'
miRNA:   3'- guAGUaUGACUGCuACUG-----CGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 21091 0.67 0.978058
Target:  5'- aCGUCGUcgaUGuCGuacggGACGCCGGCCg -3'
miRNA:   3'- -GUAGUAug-ACuGCua---CUGCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 105678 0.67 0.975557
Target:  5'- -cUCGUGCguccagacGCGGUGGCGCUGgucgcagcGCCCg -3'
miRNA:   3'- guAGUAUGac------UGCUACUGCGGC--------UGGG- -5'
25515 3' -51.3 NC_005337.1 + 77148 0.67 0.975557
Target:  5'- gCGUCcagGCUGGCGgcGACcacgggguacuGCCGGCgCCa -3'
miRNA:   3'- -GUAGua-UGACUGCuaCUG-----------CGGCUG-GG- -5'
25515 3' -51.3 NC_005337.1 + 51118 0.67 0.975557
Target:  5'- gAUCcgGCgggagGGCGAgaUGAuCGCCGACUa -3'
miRNA:   3'- gUAGuaUGa----CUGCU--ACU-GCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 75881 0.68 0.97396
Target:  5'- aCAUCAUGCaccgcugGACcagcgagcaccccgaGGUGuCGCCGGCCg -3'
miRNA:   3'- -GUAGUAUGa------CUG---------------CUACuGCGGCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.