miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25515 3' -51.3 NC_005337.1 + 28648 0.67 0.984429
Target:  5'- --aCGaGCccGACGGUGcagaacggcACGCCGGCCCc -3'
miRNA:   3'- guaGUaUGa-CUGCUAC---------UGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 29665 0.7 0.928006
Target:  5'- --gCGUGCUcccGCGGUGGCGCCGuauGCUCg -3'
miRNA:   3'- guaGUAUGAc--UGCUACUGCGGC---UGGG- -5'
25515 3' -51.3 NC_005337.1 + 31404 0.76 0.618934
Target:  5'- gCAUCAUGuccaUGACGAacaugcacuuccUGGCGCgCGGCCCg -3'
miRNA:   3'- -GUAGUAUg---ACUGCU------------ACUGCG-GCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 35358 0.69 0.933309
Target:  5'- uCGUCGgacgGCUGGCGGgcgGACGgUGACUUg -3'
miRNA:   3'- -GUAGUa---UGACUGCUa--CUGCgGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 38716 0.66 0.986204
Target:  5'- cCGUCGUcCUGACGGgggacaccGGCGUCGGCa- -3'
miRNA:   3'- -GUAGUAuGACUGCUa-------CUGCGGCUGgg -5'
25515 3' -51.3 NC_005337.1 + 39140 0.66 0.991688
Target:  5'- -cUCGUGCuuaUGACGgcGACGCuggaggaCGACCg -3'
miRNA:   3'- guAGUAUG---ACUGCuaCUGCG-------GCUGGg -5'
25515 3' -51.3 NC_005337.1 + 42118 0.71 0.890891
Target:  5'- cCAUCGa---GACGAggacGGCGCUGGCCCg -3'
miRNA:   3'- -GUAGUaugaCUGCUa---CUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 44137 0.67 0.984429
Target:  5'- --cCGUGC-GGCgGAUGACGCUGuuCCg -3'
miRNA:   3'- guaGUAUGaCUG-CUACUGCGGCugGG- -5'
25515 3' -51.3 NC_005337.1 + 47675 0.68 0.96583
Target:  5'- --gCAUGCUGGCGGgcguccgcgugcggUacGACGgCGACCCc -3'
miRNA:   3'- guaGUAUGACUGCU--------------A--CUGCgGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 49800 0.71 0.883842
Target:  5'- gGUCAcgucGCUGACGGaGGUGCCGGCCg -3'
miRNA:   3'- gUAGUa---UGACUGCUaCUGCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 50575 0.66 0.986204
Target:  5'- aCAUCGaGCaGGCGAaGaACGCC-ACCCa -3'
miRNA:   3'- -GUAGUaUGaCUGCUaC-UGCGGcUGGG- -5'
25515 3' -51.3 NC_005337.1 + 51118 0.67 0.975557
Target:  5'- gAUCcgGCgggagGGCGAgaUGAuCGCCGACUa -3'
miRNA:   3'- gUAGuaUGa----CUGCU--ACU-GCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 51240 0.76 0.618934
Target:  5'- --gCAUGCUGACGGUGucCGCCGugUa -3'
miRNA:   3'- guaGUAUGACUGCUACu-GCGGCugGg -5'
25515 3' -51.3 NC_005337.1 + 51843 0.7 0.916638
Target:  5'- cCAUCAUGuCcGACGAggagcaGAUGCUGGCCUc -3'
miRNA:   3'- -GUAGUAU-GaCUGCUa-----CUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 53425 0.71 0.897699
Target:  5'- --gCGUGgUGACGGUGACGCacaaGAUCg -3'
miRNA:   3'- guaGUAUgACUGCUACUGCGg---CUGGg -5'
25515 3' -51.3 NC_005337.1 + 54037 0.74 0.773064
Target:  5'- -----cGCUGGaGAUGuACGCCGACCCc -3'
miRNA:   3'- guaguaUGACUgCUAC-UGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 57085 0.68 0.966812
Target:  5'- gAUCAcGCgcgaGACGgcGACGCUGAUCUu -3'
miRNA:   3'- gUAGUaUGa---CUGCuaCUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 61310 0.7 0.904261
Target:  5'- uCAUCuUGCUGgucACGAUGGCgaaggucuuggGCCGGCCg -3'
miRNA:   3'- -GUAGuAUGAC---UGCUACUG-----------CGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 62344 0.69 0.952005
Target:  5'- --cCAUGaUGugGAagaggagGACGCUGACCCc -3'
miRNA:   3'- guaGUAUgACugCUa------CUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 62499 0.66 0.986869
Target:  5'- --aCAUGCUGugcuuggugucguccGCGAUG-CGCUcGCCCa -3'
miRNA:   3'- guaGUAUGAC---------------UGCUACuGCGGcUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.