miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25515 3' -51.3 NC_005337.1 + 433 0.66 0.990609
Target:  5'- gGUCGUGCgGACGcacgGACGCCuuGACa- -3'
miRNA:   3'- gUAGUAUGaCUGCua--CUGCGG--CUGgg -5'
25515 3' -51.3 NC_005337.1 + 433 0.66 0.990609
Target:  5'- gGUCGUGCgGACGcacgGACGCCuuGACa- -3'
miRNA:   3'- gUAGUAUGaCUGCua--CUGCGG--CUGgg -5'
25515 3' -51.3 NC_005337.1 + 1416 0.66 0.991801
Target:  5'- gAUCAccacguUGCUGACGugGUGuAUGCCGGCg- -3'
miRNA:   3'- gUAGU------AUGACUGC--UAC-UGCGGCUGgg -5'
25515 3' -51.3 NC_005337.1 + 2646 0.67 0.984429
Target:  5'- -----aGCgGAaGGUGGCGCCGGCCg -3'
miRNA:   3'- guaguaUGaCUgCUACUGCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 4002 0.69 0.933309
Target:  5'- gGUCGcGCUGACGAgGACGUCccgcaGGCUCa -3'
miRNA:   3'- gUAGUaUGACUGCUaCUGCGG-----CUGGG- -5'
25515 3' -51.3 NC_005337.1 + 6250 0.77 0.587403
Target:  5'- aGUCAgcgucGCUGACGcUGGCGCCGGCguCCa -3'
miRNA:   3'- gUAGUa----UGACUGCuACUGCGGCUG--GG- -5'
25515 3' -51.3 NC_005337.1 + 6994 0.66 0.986033
Target:  5'- --cCGUGCuuguccaUGGCGcgGACGuCCGcGCCCg -3'
miRNA:   3'- guaGUAUG-------ACUGCuaCUGC-GGC-UGGG- -5'
25515 3' -51.3 NC_005337.1 + 7137 0.69 0.947704
Target:  5'- gAUCAgcacGCgGACGAUGucCGCCucgGACCCc -3'
miRNA:   3'- gUAGUa---UGaCUGCUACu-GCGG---CUGGG- -5'
25515 3' -51.3 NC_005337.1 + 7289 0.67 0.982485
Target:  5'- aGUCGUGCUgGACGuagcagugcaGUGGCGUguACCCg -3'
miRNA:   3'- gUAGUAUGA-CUGC----------UACUGCGgcUGGG- -5'
25515 3' -51.3 NC_005337.1 + 8731 0.7 0.916638
Target:  5'- aCGUCGUcCUuGGCGcgGAUGUCGGCgCCg -3'
miRNA:   3'- -GUAGUAuGA-CUGCuaCUGCGGCUG-GG- -5'
25515 3' -51.3 NC_005337.1 + 12779 0.66 0.986204
Target:  5'- -----cGCUGccGCGAUGACGa-GGCCCa -3'
miRNA:   3'- guaguaUGAC--UGCUACUGCggCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 14578 0.7 0.916638
Target:  5'- -cUCGcgGCUccgguccACGAUGGCGCCGGCCa -3'
miRNA:   3'- guAGUa-UGAc------UGCUACUGCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 16053 0.66 0.991801
Target:  5'- uCcgCGcACUGcAUGAUGACGUCGggcggcuccgcGCCCa -3'
miRNA:   3'- -GuaGUaUGAC-UGCUACUGCGGC-----------UGGG- -5'
25515 3' -51.3 NC_005337.1 + 16592 0.69 0.956061
Target:  5'- aCGUUucUGgUGAuauCGAUGACGCCGugcguGCCCg -3'
miRNA:   3'- -GUAGu-AUgACU---GCUACUGCGGC-----UGGG- -5'
25515 3' -51.3 NC_005337.1 + 19701 0.69 0.933309
Target:  5'- uCAUCGUguGCgGGCGggGGCGguaaguccugcuCCGGCCCg -3'
miRNA:   3'- -GUAGUA--UGaCUGCuaCUGC------------GGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 21091 0.67 0.978058
Target:  5'- aCGUCGUcgaUGuCGuacggGACGCCGGCCg -3'
miRNA:   3'- -GUAGUAug-ACuGCua---CUGCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 24878 0.69 0.956061
Target:  5'- --cCGUGuCUGugGAcgGcACGCCaGACCCg -3'
miRNA:   3'- guaGUAU-GACugCUa-C-UGCGG-CUGGG- -5'
25515 3' -51.3 NC_005337.1 + 25078 0.67 0.984429
Target:  5'- uCGUCAaGCUG-CGc-GACGCCGagcuccGCCCg -3'
miRNA:   3'- -GUAGUaUGACuGCuaCUGCGGC------UGGG- -5'
25515 3' -51.3 NC_005337.1 + 25505 0.68 0.972854
Target:  5'- --aCGUACUcGuuGAUGACGCgcuccaggcagCGGCCCa -3'
miRNA:   3'- guaGUAUGA-CugCUACUGCG-----------GCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 26922 0.68 0.96346
Target:  5'- gGUgGUGCUGGa---GACGCCG-CCCa -3'
miRNA:   3'- gUAgUAUGACUgcuaCUGCGGCuGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.