miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25515 3' -51.3 NC_005337.1 + 125851 1.14 0.004034
Target:  5'- aCAUCAUACUGACGAUGACGCCGACCCa -3'
miRNA:   3'- -GUAGUAUGACUGCUACUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 127609 0.78 0.535629
Target:  5'- aGUCGUGCUGugGGUGcACGCCGcuggaucuucuGCUCa -3'
miRNA:   3'- gUAGUAUGACugCUAC-UGCGGC-----------UGGG- -5'
25515 3' -51.3 NC_005337.1 + 6250 0.77 0.587403
Target:  5'- aGUCAgcgucGCUGACGcUGGCGCCGGCguCCa -3'
miRNA:   3'- gUAGUa----UGACUGCuACUGCGGCUG--GG- -5'
25515 3' -51.3 NC_005337.1 + 31404 0.76 0.618934
Target:  5'- gCAUCAUGuccaUGACGAacaugcacuuccUGGCGCgCGGCCCg -3'
miRNA:   3'- -GUAGUAUg---ACUGCU------------ACUGCG-GCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 51240 0.76 0.618934
Target:  5'- --gCAUGCUGACGGUGucCGCCGugUa -3'
miRNA:   3'- guaGUAUGACUGCUACu-GCGGCugGg -5'
25515 3' -51.3 NC_005337.1 + 122397 0.75 0.723364
Target:  5'- gGUCGUGCUGcGCGgcGGCGCgCGGCgCCu -3'
miRNA:   3'- gUAGUAUGAC-UGCuaCUGCG-GCUG-GG- -5'
25515 3' -51.3 NC_005337.1 + 127362 0.74 0.73351
Target:  5'- gAUgAUGCUGcGCGccGGCGCgGACCCg -3'
miRNA:   3'- gUAgUAUGAC-UGCuaCUGCGgCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 54037 0.74 0.773064
Target:  5'- -----cGCUGGaGAUGuACGCCGACCCc -3'
miRNA:   3'- guaguaUGACUgCUAC-UGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 114556 0.73 0.801361
Target:  5'- cCAUCGUGgaGGCgcggccgcaGAUGGCGCCGGCgCu -3'
miRNA:   3'- -GUAGUAUgaCUG---------CUACUGCGGCUGgG- -5'
25515 3' -51.3 NC_005337.1 + 101786 0.73 0.810482
Target:  5'- cCAUCGUGCUcagaucGACGAUGucaagaucuccGCGCCGgacuucucGCCCa -3'
miRNA:   3'- -GUAGUAUGA------CUGCUAC-----------UGCGGC--------UGGG- -5'
25515 3' -51.3 NC_005337.1 + 129794 0.72 0.856544
Target:  5'- --aCGUGCUGGCGAUGcagagcaccugccgcGCGUCGAUCa -3'
miRNA:   3'- guaGUAUGACUGCUAC---------------UGCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 105153 0.72 0.861296
Target:  5'- aCAUgGUGCUGcuggcgcugcACGgcGugGUCGACCCc -3'
miRNA:   3'- -GUAgUAUGAC----------UGCuaCugCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 117938 0.71 0.869039
Target:  5'- -----cGCUGACGAgGACGaCCGgACCCu -3'
miRNA:   3'- guaguaUGACUGCUaCUGC-GGC-UGGG- -5'
25515 3' -51.3 NC_005337.1 + 96252 0.71 0.876557
Target:  5'- aCAUCAgcgUGCaGACGAUGGCcauGCCGGcguuCCCg -3'
miRNA:   3'- -GUAGU---AUGaCUGCUACUG---CGGCU----GGG- -5'
25515 3' -51.3 NC_005337.1 + 108961 0.71 0.883842
Target:  5'- gGUCGUACacgcGcCGGUcGACGCgCGGCCCg -3'
miRNA:   3'- gUAGUAUGa---CuGCUA-CUGCG-GCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 86591 0.71 0.883842
Target:  5'- cCGUCGUACcGcACGcgGACGCCcGCCa -3'
miRNA:   3'- -GUAGUAUGaC-UGCuaCUGCGGcUGGg -5'
25515 3' -51.3 NC_005337.1 + 49800 0.71 0.883842
Target:  5'- gGUCAcgucGCUGACGGaGGUGCCGGCCg -3'
miRNA:   3'- gUAGUa---UGACUGCUaCUGCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 74610 0.71 0.890891
Target:  5'- gGUCGUGCU--CGcgGGCGCCGACa- -3'
miRNA:   3'- gUAGUAUGAcuGCuaCUGCGGCUGgg -5'
25515 3' -51.3 NC_005337.1 + 107112 0.71 0.890891
Target:  5'- aCGUCGUcuucgACgcGGCGGUGACGCUGugUCc -3'
miRNA:   3'- -GUAGUA-----UGa-CUGCUACUGCGGCugGG- -5'
25515 3' -51.3 NC_005337.1 + 42118 0.71 0.890891
Target:  5'- cCAUCGa---GACGAggacGGCGCUGGCCCg -3'
miRNA:   3'- -GUAGUaugaCUGCUa---CUGCGGCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.