miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25515 3' -51.3 NC_005337.1 + 53425 0.71 0.897699
Target:  5'- --gCGUGgUGACGGUGACGCacaaGAUCg -3'
miRNA:   3'- guaGUAUgACUGCUACUGCGg---CUGGg -5'
25515 3' -51.3 NC_005337.1 + 90144 0.71 0.897699
Target:  5'- gCGUCAUccgccgcacggACUcGACGccGACGCUGAUCCc -3'
miRNA:   3'- -GUAGUA-----------UGA-CUGCuaCUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 84409 0.7 0.904261
Target:  5'- aCAUCGUgcgGCUGcUGAUGcCGCCGGcguCCCg -3'
miRNA:   3'- -GUAGUA---UGACuGCUACuGCGGCU---GGG- -5'
25515 3' -51.3 NC_005337.1 + 61310 0.7 0.904261
Target:  5'- uCAUCuUGCUGgucACGAUGGCgaaggucuuggGCCGGCCg -3'
miRNA:   3'- -GUAGuAUGAC---UGCUACUG-----------CGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 94726 0.7 0.910575
Target:  5'- --aCGUGCguggcguucuUGACGGUGACGCUgGACuCCa -3'
miRNA:   3'- guaGUAUG----------ACUGCUACUGCGG-CUG-GG- -5'
25515 3' -51.3 NC_005337.1 + 79826 0.7 0.916638
Target:  5'- uCAUCugGCUGAUGAcacauccgUGGCGCUGAUCUc -3'
miRNA:   3'- -GUAGuaUGACUGCU--------ACUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 14578 0.7 0.916638
Target:  5'- -cUCGcgGCUccgguccACGAUGGCGCCGGCCa -3'
miRNA:   3'- guAGUa-UGAc------UGCUACUGCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 105544 0.7 0.916638
Target:  5'- -----gACUGgaACGGUGGCGCC-ACCCa -3'
miRNA:   3'- guaguaUGAC--UGCUACUGCGGcUGGG- -5'
25515 3' -51.3 NC_005337.1 + 51843 0.7 0.916638
Target:  5'- cCAUCAUGuCcGACGAggagcaGAUGCUGGCCUc -3'
miRNA:   3'- -GUAGUAU-GaCUGCUa-----CUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 8731 0.7 0.916638
Target:  5'- aCGUCGUcCUuGGCGcgGAUGUCGGCgCCg -3'
miRNA:   3'- -GUAGUAuGA-CUGCuaCUGCGGCUG-GG- -5'
25515 3' -51.3 NC_005337.1 + 109708 0.7 0.916638
Target:  5'- gAUCcg-UUGGCGAUGGCGCCGGaacgCCg -3'
miRNA:   3'- gUAGuauGACUGCUACUGCGGCUg---GG- -5'
25515 3' -51.3 NC_005337.1 + 124731 0.7 0.918993
Target:  5'- gCGUCGUGCUGAccuCGGUGACaucgagaccgccaaCCGGCUCa -3'
miRNA:   3'- -GUAGUAUGACU---GCUACUGc-------------GGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 120376 0.7 0.922449
Target:  5'- --------cGACGAUGACGCUGGuCCCc -3'
miRNA:   3'- guaguaugaCUGCUACUGCGGCU-GGG- -5'
25515 3' -51.3 NC_005337.1 + 106574 0.7 0.928006
Target:  5'- gAUCGUGCagccggUGGCGugGACGCgCGACCUg -3'
miRNA:   3'- gUAGUAUG------ACUGCuaCUGCG-GCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 29665 0.7 0.928006
Target:  5'- --gCGUGCUcccGCGGUGGCGCCGuauGCUCg -3'
miRNA:   3'- guaGUAUGAc--UGCUACUGCGGC---UGGG- -5'
25515 3' -51.3 NC_005337.1 + 67331 0.69 0.933309
Target:  5'- gGUCAUGgUGuacacgcccuccACGAUGGCGCa-GCCCa -3'
miRNA:   3'- gUAGUAUgAC------------UGCUACUGCGgcUGGG- -5'
25515 3' -51.3 NC_005337.1 + 35358 0.69 0.933309
Target:  5'- uCGUCGgacgGCUGGCGGgcgGACGgUGACUUg -3'
miRNA:   3'- -GUAGUa---UGACUGCUa--CUGCgGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 19701 0.69 0.933309
Target:  5'- uCAUCGUguGCgGGCGggGGCGguaaguccugcuCCGGCCCg -3'
miRNA:   3'- -GUAGUA--UGaCUGCuaCUGC------------GGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 4002 0.69 0.933309
Target:  5'- gGUCGcGCUGACGAgGACGUCccgcaGGCUCa -3'
miRNA:   3'- gUAGUaUGACUGCUaCUGCGG-----CUGGG- -5'
25515 3' -51.3 NC_005337.1 + 124264 0.69 0.933309
Target:  5'- gAUCGaGCacgacGACGgcGGCGCCGGCCa -3'
miRNA:   3'- gUAGUaUGa----CUGCuaCUGCGGCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.