miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25515 3' -51.3 NC_005337.1 + 115438 0.69 0.952005
Target:  5'- --gCGUGCUGGCGAUaGA-GCCGGCg- -3'
miRNA:   3'- guaGUAUGACUGCUA-CUgCGGCUGgg -5'
25515 3' -51.3 NC_005337.1 + 29665 0.7 0.928006
Target:  5'- --gCGUGCUcccGCGGUGGCGCCGuauGCUCg -3'
miRNA:   3'- guaGUAUGAc--UGCUACUGCGGC---UGGG- -5'
25515 3' -51.3 NC_005337.1 + 67331 0.69 0.933309
Target:  5'- gGUCAUGgUGuacacgcccuccACGAUGGCGCa-GCCCa -3'
miRNA:   3'- gUAGUAUgAC------------UGCUACUGCGgcUGGG- -5'
25515 3' -51.3 NC_005337.1 + 35358 0.69 0.933309
Target:  5'- uCGUCGgacgGCUGGCGGgcgGACGgUGACUUg -3'
miRNA:   3'- -GUAGUa---UGACUGCUa--CUGCgGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 124264 0.69 0.933309
Target:  5'- gAUCGaGCacgacGACGgcGGCGCCGGCCa -3'
miRNA:   3'- gUAGUaUGa----CUGCuaCUGCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 121814 0.69 0.938359
Target:  5'- -----cGCUgGACGAguucgguaUGACGCCGGCCg -3'
miRNA:   3'- guaguaUGA-CUGCU--------ACUGCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 97856 0.69 0.943157
Target:  5'- --aCGcGCUGGCGGUGGcCGCCG-CCg -3'
miRNA:   3'- guaGUaUGACUGCUACU-GCGGCuGGg -5'
25515 3' -51.3 NC_005337.1 + 7137 0.69 0.947704
Target:  5'- gAUCAgcacGCgGACGAUGucCGCCucgGACCCc -3'
miRNA:   3'- gUAGUa---UGaCUGCUACu-GCGG---CUGGG- -5'
25515 3' -51.3 NC_005337.1 + 132310 0.69 0.947704
Target:  5'- --gCGUGCacggcGGCGGagggGGCGCUGGCCCa -3'
miRNA:   3'- guaGUAUGa----CUGCUa---CUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 14578 0.7 0.916638
Target:  5'- -cUCGcgGCUccgguccACGAUGGCGCCGGCCa -3'
miRNA:   3'- guAGUa-UGAc------UGCUACUGCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 53425 0.71 0.897699
Target:  5'- --gCGUGgUGACGGUGACGCacaaGAUCg -3'
miRNA:   3'- guaGUAUgACUGCUACUGCGg---CUGGg -5'
25515 3' -51.3 NC_005337.1 + 42118 0.71 0.890891
Target:  5'- cCAUCGa---GACGAggacGGCGCUGGCCCg -3'
miRNA:   3'- -GUAGUaugaCUGCUa---CUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 51240 0.76 0.618934
Target:  5'- --gCAUGCUGACGGUGucCGCCGugUa -3'
miRNA:   3'- guaGUAUGACUGCUACu-GCGGCugGg -5'
25515 3' -51.3 NC_005337.1 + 31404 0.76 0.618934
Target:  5'- gCAUCAUGuccaUGACGAacaugcacuuccUGGCGCgCGGCCCg -3'
miRNA:   3'- -GUAGUAUg---ACUGCU------------ACUGCG-GCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 122397 0.75 0.723364
Target:  5'- gGUCGUGCUGcGCGgcGGCGCgCGGCgCCu -3'
miRNA:   3'- gUAGUAUGAC-UGCuaCUGCG-GCUG-GG- -5'
25515 3' -51.3 NC_005337.1 + 101786 0.73 0.810482
Target:  5'- cCAUCGUGCUcagaucGACGAUGucaagaucuccGCGCCGgacuucucGCCCa -3'
miRNA:   3'- -GUAGUAUGA------CUGCUAC-----------UGCGGC--------UGGG- -5'
25515 3' -51.3 NC_005337.1 + 129794 0.72 0.856544
Target:  5'- --aCGUGCUGGCGAUGcagagcaccugccgcGCGUCGAUCa -3'
miRNA:   3'- guaGUAUGACUGCUAC---------------UGCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 117938 0.71 0.869039
Target:  5'- -----cGCUGACGAgGACGaCCGgACCCu -3'
miRNA:   3'- guaguaUGACUGCUaCUGC-GGC-UGGG- -5'
25515 3' -51.3 NC_005337.1 + 96252 0.71 0.876557
Target:  5'- aCAUCAgcgUGCaGACGAUGGCcauGCCGGcguuCCCg -3'
miRNA:   3'- -GUAGU---AUGaCUGCUACUG---CGGCU----GGG- -5'
25515 3' -51.3 NC_005337.1 + 108961 0.71 0.883842
Target:  5'- gGUCGUACacgcGcCGGUcGACGCgCGGCCCg -3'
miRNA:   3'- gUAGUAUGa---CuGCUA-CUGCG-GCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.