miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25515 3' -51.3 NC_005337.1 + 125851 1.14 0.004034
Target:  5'- aCAUCAUACUGACGAUGACGCCGACCCa -3'
miRNA:   3'- -GUAGUAUGACUGCUACUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 8731 0.7 0.916638
Target:  5'- aCGUCGUcCUuGGCGcgGAUGUCGGCgCCg -3'
miRNA:   3'- -GUAGUAuGA-CUGCuaCUGCGGCUG-GG- -5'
25515 3' -51.3 NC_005337.1 + 124731 0.7 0.918993
Target:  5'- gCGUCGUGCUGAccuCGGUGACaucgagaccgccaaCCGGCUCa -3'
miRNA:   3'- -GUAGUAUGACU---GCUACUGc-------------GGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 1416 0.66 0.991801
Target:  5'- gAUCAccacguUGCUGACGugGUGuAUGCCGGCg- -3'
miRNA:   3'- gUAGU------AUGACUGC--UAC-UGCGGCUGgg -5'
25515 3' -51.3 NC_005337.1 + 114556 0.73 0.801361
Target:  5'- cCAUCGUGgaGGCgcggccgcaGAUGGCGCCGGCgCu -3'
miRNA:   3'- -GUAGUAUgaCUG---------CUACUGCGGCUGgG- -5'
25515 3' -51.3 NC_005337.1 + 105153 0.72 0.861296
Target:  5'- aCAUgGUGCUGcuggcgcugcACGgcGugGUCGACCCc -3'
miRNA:   3'- -GUAgUAUGAC----------UGCuaCugCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 86591 0.71 0.883842
Target:  5'- cCGUCGUACcGcACGcgGACGCCcGCCa -3'
miRNA:   3'- -GUAGUAUGaC-UGCuaCUGCGGcUGGg -5'
25515 3' -51.3 NC_005337.1 + 74610 0.71 0.890891
Target:  5'- gGUCGUGCU--CGcgGGCGCCGACa- -3'
miRNA:   3'- gUAGUAUGAcuGCuaCUGCGGCUGgg -5'
25515 3' -51.3 NC_005337.1 + 61310 0.7 0.904261
Target:  5'- uCAUCuUGCUGgucACGAUGGCgaaggucuuggGCCGGCCg -3'
miRNA:   3'- -GUAGuAUGAC---UGCUACUG-----------CGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 109708 0.7 0.916638
Target:  5'- gAUCcg-UUGGCGAUGGCGCCGGaacgCCg -3'
miRNA:   3'- gUAGuauGACUGCUACUGCGGCUg---GG- -5'
25515 3' -51.3 NC_005337.1 + 94726 0.7 0.910575
Target:  5'- --aCGUGCguggcguucuUGACGGUGACGCUgGACuCCa -3'
miRNA:   3'- guaGUAUG----------ACUGCUACUGCGG-CUG-GG- -5'
25515 3' -51.3 NC_005337.1 + 90144 0.71 0.897699
Target:  5'- gCGUCAUccgccgcacggACUcGACGccGACGCUGAUCCc -3'
miRNA:   3'- -GUAGUA-----------UGA-CUGCuaCUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 6250 0.77 0.587403
Target:  5'- aGUCAgcgucGCUGACGcUGGCGCCGGCguCCa -3'
miRNA:   3'- gUAGUa----UGACUGCuACUGCGGCUG--GG- -5'
25515 3' -51.3 NC_005337.1 + 79826 0.7 0.916638
Target:  5'- uCAUCugGCUGAUGAcacauccgUGGCGCUGAUCUc -3'
miRNA:   3'- -GUAGuaUGACUGCU--------ACUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 127362 0.74 0.73351
Target:  5'- gAUgAUGCUGcGCGccGGCGCgGACCCg -3'
miRNA:   3'- gUAgUAUGAC-UGCuaCUGCGgCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 107112 0.71 0.890891
Target:  5'- aCGUCGUcuucgACgcGGCGGUGACGCUGugUCc -3'
miRNA:   3'- -GUAGUA-----UGa-CUGCUACUGCGGCugGG- -5'
25515 3' -51.3 NC_005337.1 + 105544 0.7 0.916638
Target:  5'- -----gACUGgaACGGUGGCGCC-ACCCa -3'
miRNA:   3'- guaguaUGAC--UGCUACUGCGGcUGGG- -5'
25515 3' -51.3 NC_005337.1 + 51843 0.7 0.916638
Target:  5'- cCAUCAUGuCcGACGAggagcaGAUGCUGGCCUc -3'
miRNA:   3'- -GUAGUAU-GaCUGCUa-----CUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 54037 0.74 0.773064
Target:  5'- -----cGCUGGaGAUGuACGCCGACCCc -3'
miRNA:   3'- guaguaUGACUgCUAC-UGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 49800 0.71 0.883842
Target:  5'- gGUCAcgucGCUGACGGaGGUGCCGGCCg -3'
miRNA:   3'- gUAGUa---UGACUGCUaCUGCGGCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.