miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25515 3' -51.3 NC_005337.1 + 133641 0.66 0.990355
Target:  5'- --cCGUGCagGACGucgccgcgcugGACGCCGACgCg -3'
miRNA:   3'- guaGUAUGa-CUGCua---------CUGCGGCUGgG- -5'
25515 3' -51.3 NC_005337.1 + 133641 0.66 0.990355
Target:  5'- --cCGUGCagGACGucgccgcgcugGACGCCGACgCg -3'
miRNA:   3'- guaGUAUGa-CUGCua---------CUGCGGCUGgG- -5'
25515 3' -51.3 NC_005337.1 + 132310 0.69 0.947704
Target:  5'- --gCGUGCacggcGGCGGagggGGCGCUGGCCCa -3'
miRNA:   3'- guaGUAUGa----CUGCUa---CUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 132254 0.68 0.96346
Target:  5'- ---uGUACU--CGAUGACGCCGAUggCCg -3'
miRNA:   3'- guagUAUGAcuGCUACUGCGGCUG--GG- -5'
25515 3' -51.3 NC_005337.1 + 130112 0.66 0.987819
Target:  5'- cCGUCAUGgaaGACGGcguUGAgGCCG-CCCu -3'
miRNA:   3'- -GUAGUAUga-CUGCU---ACUgCGGCuGGG- -5'
25515 3' -51.3 NC_005337.1 + 129794 0.72 0.856544
Target:  5'- --aCGUGCUGGCGAUGcagagcaccugccgcGCGUCGAUCa -3'
miRNA:   3'- guaGUAUGACUGCUAC---------------UGCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 128236 0.66 0.990609
Target:  5'- -----aGCUGAUGggGcuGCGCaCGGCCCu -3'
miRNA:   3'- guaguaUGACUGCuaC--UGCG-GCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 127674 0.67 0.978058
Target:  5'- -cUCGaGCUGAUGcUGACcgucgGCCGGCUCg -3'
miRNA:   3'- guAGUaUGACUGCuACUG-----CGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 127660 0.68 0.968091
Target:  5'- --gCGUGCcGGCGccucauccagaugGGCGCCGACCUg -3'
miRNA:   3'- guaGUAUGaCUGCua-----------CUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 127609 0.78 0.535629
Target:  5'- aGUCGUGCUGugGGUGcACGCCGcuggaucuucuGCUCa -3'
miRNA:   3'- gUAGUAUGACugCUAC-UGCGGC-----------UGGG- -5'
25515 3' -51.3 NC_005337.1 + 127362 0.74 0.73351
Target:  5'- gAUgAUGCUGcGCGccGGCGCgGACCCg -3'
miRNA:   3'- gUAgUAUGAC-UGCuaCUGCGgCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 125851 1.14 0.004034
Target:  5'- aCAUCAUACUGACGAUGACGCCGACCCa -3'
miRNA:   3'- -GUAGUAUGACUGCUACUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 125515 0.67 0.982485
Target:  5'- gGUCGUgcgGCUGcucguGCGGUacGGCGCCGACauCCg -3'
miRNA:   3'- gUAGUA---UGAC-----UGCUA--CUGCGGCUG--GG- -5'
25515 3' -51.3 NC_005337.1 + 124731 0.7 0.918993
Target:  5'- gCGUCGUGCUGAccuCGGUGACaucgagaccgccaaCCGGCUCa -3'
miRNA:   3'- -GUAGUAUGACU---GCUACUGc-------------GGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 124264 0.69 0.933309
Target:  5'- gAUCGaGCacgacGACGgcGGCGCCGGCCa -3'
miRNA:   3'- gUAGUaUGa----CUGCuaCUGCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 124015 0.67 0.982485
Target:  5'- gGUCcgggaGCUGcUGAUGugGCUGGCCa -3'
miRNA:   3'- gUAGua---UGACuGCUACugCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 122397 0.75 0.723364
Target:  5'- gGUCGUGCUGcGCGgcGGCGCgCGGCgCCu -3'
miRNA:   3'- gUAGUAUGAC-UGCuaCUGCG-GCUG-GG- -5'
25515 3' -51.3 NC_005337.1 + 121814 0.69 0.938359
Target:  5'- -----cGCUgGACGAguucgguaUGACGCCGGCCg -3'
miRNA:   3'- guaguaUGA-CUGCU--------ACUGCGGCUGGg -5'
25515 3' -51.3 NC_005337.1 + 120376 0.7 0.922449
Target:  5'- --------cGACGAUGACGCUGGuCCCc -3'
miRNA:   3'- guaguaugaCUGCUACUGCGGCU-GGG- -5'
25515 3' -51.3 NC_005337.1 + 119550 0.68 0.969942
Target:  5'- --gCAgcgGCUGGCGAUgGGCGUCGuggagagcagguACCCg -3'
miRNA:   3'- guaGUa--UGACUGCUA-CUGCGGC------------UGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.