miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 3' -54.6 NC_005337.1 + 68556 0.69 0.805738
Target:  5'- aCGGCgcCGGGCGCgccccaCcgCGUGCG-GCu -3'
miRNA:   3'- -GUCGauGCCUGCGa-----GuaGCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 71835 0.68 0.840325
Target:  5'- cCGGCaGCGG-CGCgUCAaCGUGUgGUGCa -3'
miRNA:   3'- -GUCGaUGCCuGCG-AGUaGCACG-CACG- -5'
25516 3' -54.6 NC_005337.1 + 74480 0.68 0.840325
Target:  5'- -cGCU--GGACGCguaCAUCGUGCGgGUa -3'
miRNA:   3'- guCGAugCCUGCGa--GUAGCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 75620 0.66 0.923857
Target:  5'- gAGCUugGcGCGCgUGUCccGCGUGCg -3'
miRNA:   3'- gUCGAugCcUGCGaGUAGcaCGCACG- -5'
25516 3' -54.6 NC_005337.1 + 80414 0.66 0.939369
Target:  5'- -uGCUcGCGGuggcguCGCUgGUCGUGCccGCg -3'
miRNA:   3'- guCGA-UGCCu-----GCGAgUAGCACGcaCG- -5'
25516 3' -54.6 NC_005337.1 + 84395 0.66 0.939369
Target:  5'- gAGCUGCuacAUGgaCAUCGUGCG-GCu -3'
miRNA:   3'- gUCGAUGcc-UGCgaGUAGCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 85660 0.67 0.879126
Target:  5'- -cGCUGCGGAUGCUC-UUGUacaucGCGUuCa -3'
miRNA:   3'- guCGAUGCCUGCGAGuAGCA-----CGCAcG- -5'
25516 3' -54.6 NC_005337.1 + 88217 0.72 0.633956
Target:  5'- cCGGCcuccucgaggagGCGGGCuGCUgcgaagaCGUCGUGCGUGCc -3'
miRNA:   3'- -GUCGa-----------UGCCUG-CGA-------GUAGCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 89235 0.69 0.787438
Target:  5'- cCAGCuUGCGGAg---CAUCGUGCG-GCa -3'
miRNA:   3'- -GUCG-AUGCCUgcgaGUAGCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 89820 0.67 0.912284
Target:  5'- uCAGCUcgGCGaGGCGCUCGaCGUccuccgGCG-GCg -3'
miRNA:   3'- -GUCGA--UGC-CUGCGAGUaGCA------CGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 92387 0.67 0.899734
Target:  5'- uCGGUUuuGGACGCgaCGUCGggGaCGUGCu -3'
miRNA:   3'- -GUCGAugCCUGCGa-GUAGCa-C-GCACG- -5'
25516 3' -54.6 NC_005337.1 + 97941 0.67 0.891063
Target:  5'- -cGC-GCGGACGCUCuaCGUGUucccgaccuccuccGUGCg -3'
miRNA:   3'- guCGaUGCCUGCGAGuaGCACG--------------CACG- -5'
25516 3' -54.6 NC_005337.1 + 99668 0.66 0.934444
Target:  5'- gCGGCU--GGGCGCgcc-CGUgGCGUGCg -3'
miRNA:   3'- -GUCGAugCCUGCGaguaGCA-CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 99904 0.72 0.657842
Target:  5'- uGGCUcgccGCGGcgGCGCUCcUCGUGC-UGCu -3'
miRNA:   3'- gUCGA----UGCC--UGCGAGuAGCACGcACG- -5'
25516 3' -54.6 NC_005337.1 + 101225 0.69 0.82339
Target:  5'- aGGUcGCGGAgGCgUCcgCGcGCGUGCu -3'
miRNA:   3'- gUCGaUGCCUgCG-AGuaGCaCGCACG- -5'
25516 3' -54.6 NC_005337.1 + 104179 0.69 0.805738
Target:  5'- aAGgUGCGcGCGCUCAcCGUGCGcgaGCg -3'
miRNA:   3'- gUCgAUGCcUGCGAGUaGCACGCa--CG- -5'
25516 3' -54.6 NC_005337.1 + 104190 0.66 0.934444
Target:  5'- gAGCUGgaGGACGCcugCAccugcgcccgacUCGUGUGUGa -3'
miRNA:   3'- gUCGAUg-CCUGCGa--GU------------AGCACGCACg -5'
25516 3' -54.6 NC_005337.1 + 104309 0.68 0.840325
Target:  5'- gGGCgcgGCGG-CGCUC----UGCGUGCg -3'
miRNA:   3'- gUCGa--UGCCuGCGAGuagcACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 105341 0.69 0.82339
Target:  5'- gCGGCgGCGGGagGCUCccGUCGaucGCGUGCu -3'
miRNA:   3'- -GUCGaUGCCUg-CGAG--UAGCa--CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 108843 0.7 0.778067
Target:  5'- aAGCgcGCGGGCGacacgcCGUCGUGCGaGCg -3'
miRNA:   3'- gUCGa-UGCCUGCga----GUAGCACGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.