miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 3' -54.6 NC_005337.1 + 39549 0.67 0.879126
Target:  5'- cCGGCgccccgGCGGGCGCUCGgguacUCGUccuCGUGg -3'
miRNA:   3'- -GUCGa-----UGCCUGCGAGU-----AGCAc--GCACg -5'
25516 3' -54.6 NC_005337.1 + 39845 0.67 0.899734
Target:  5'- uGGuCUGCGGAgugcugcugcuCGcCUCcgCGUGUGUGUu -3'
miRNA:   3'- gUC-GAUGCCU-----------GC-GAGuaGCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 42508 0.68 0.848503
Target:  5'- aAGCUGCGGACGUcCAgcuUCGagGCGcacGCg -3'
miRNA:   3'- gUCGAUGCCUGCGaGU---AGCa-CGCa--CG- -5'
25516 3' -54.6 NC_005337.1 + 42548 0.73 0.595554
Target:  5'- -cGCUGCGGGCGCUgGUgCGgcUGCG-GCu -3'
miRNA:   3'- guCGAUGCCUGCGAgUA-GC--ACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 42637 0.66 0.918193
Target:  5'- gCGGUggucgACGGcUGCUC--CGUGCGUGUc -3'
miRNA:   3'- -GUCGa----UGCCuGCGAGuaGCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 42734 0.66 0.934444
Target:  5'- uGGCcACGGcCGCgccgagCGUGCgGUGCg -3'
miRNA:   3'- gUCGaUGCCuGCGagua--GCACG-CACG- -5'
25516 3' -54.6 NC_005337.1 + 45798 0.67 0.886229
Target:  5'- aCAGCUuggcgagcGCGGAguucUGCUCcUCGacgGCGUGUu -3'
miRNA:   3'- -GUCGA--------UGCCU----GCGAGuAGCa--CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 47670 0.71 0.678525
Target:  5'- -uGCUGCgaGGGCGCg-AUCGUGCGccUGCg -3'
miRNA:   3'- guCGAUG--CCUGCGagUAGCACGC--ACG- -5'
25516 3' -54.6 NC_005337.1 + 47678 0.66 0.939369
Target:  5'- -uGCUgGCGGGCG-UCcgCGUGCGguacgacgGCg -3'
miRNA:   3'- guCGA-UGCCUGCgAGuaGCACGCa-------CG- -5'
25516 3' -54.6 NC_005337.1 + 51635 0.69 0.831951
Target:  5'- gAGCUGCGGucgGCGCUCcgCGgucGCcaGCg -3'
miRNA:   3'- gUCGAUGCC---UGCGAGuaGCa--CGcaCG- -5'
25516 3' -54.6 NC_005337.1 + 53657 0.67 0.90613
Target:  5'- -cGCcACGcGCGCUUcgCG-GCGUGCu -3'
miRNA:   3'- guCGaUGCcUGCGAGuaGCaCGCACG- -5'
25516 3' -54.6 NC_005337.1 + 56045 0.68 0.864246
Target:  5'- gGGCgUGCGGuucguggacACGCUC-UCGUaCGUGCu -3'
miRNA:   3'- gUCG-AUGCC---------UGCGAGuAGCAcGCACG- -5'
25516 3' -54.6 NC_005337.1 + 56112 0.66 0.929273
Target:  5'- -uGCU-CGaGGCGCacggCAUCGccaGCGUGCg -3'
miRNA:   3'- guCGAuGC-CUGCGa---GUAGCa--CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 57295 0.67 0.899734
Target:  5'- gCGGCUGCGGcgcCGCUC-UCGgaaccGCGcgGCc -3'
miRNA:   3'- -GUCGAUGCCu--GCGAGuAGCa----CGCa-CG- -5'
25516 3' -54.6 NC_005337.1 + 61370 0.66 0.928743
Target:  5'- gAGCgucuucGCGGACuggaagaGCUcCGUCGcggagGCGUGCa -3'
miRNA:   3'- gUCGa-----UGCCUG-------CGA-GUAGCa----CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 62010 0.66 0.929273
Target:  5'- aCAGCaGCcGcCGCUCGUCGUGgGccaugGCg -3'
miRNA:   3'- -GUCGaUGcCuGCGAGUAGCACgCa----CG- -5'
25516 3' -54.6 NC_005337.1 + 63899 0.71 0.678525
Target:  5'- gCAGUacuucUACGGACGCgacCA-CGUGCGgcgGCg -3'
miRNA:   3'- -GUCG-----AUGCCUGCGa--GUaGCACGCa--CG- -5'
25516 3' -54.6 NC_005337.1 + 64413 0.66 0.934444
Target:  5'- cCAGCaGCGGcCGCUUggCGgccaccaGCGUGUc -3'
miRNA:   3'- -GUCGaUGCCuGCGAGuaGCa------CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 67697 0.66 0.929273
Target:  5'- gGGUUGCGGAgGUacuUCAUCGUcuucucgggccGCGgGCg -3'
miRNA:   3'- gUCGAUGCCUgCG---AGUAGCA-----------CGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 67961 0.66 0.934444
Target:  5'- cCAGCccgcgaccGCGG-CGCUCAcgcgguccagggUCGgcGCGUGCg -3'
miRNA:   3'- -GUCGa-------UGCCuGCGAGU------------AGCa-CGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.