miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 3' -54.6 NC_005337.1 + 2483 0.7 0.749183
Target:  5'- gCGGCUAuguuCGGguACGCgcgCAgcagCGUGUGUGCg -3'
miRNA:   3'- -GUCGAU----GCC--UGCGa--GUa---GCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 10440 0.66 0.934444
Target:  5'- -uGCgcgGCGGuGCGCgCGUCGUGCGc-- -3'
miRNA:   3'- guCGa--UGCC-UGCGaGUAGCACGCacg -5'
25516 3' -54.6 NC_005337.1 + 10970 0.67 0.912284
Target:  5'- uGGCcgGCGGAucCGCgCAgcgCGUGCG-GCa -3'
miRNA:   3'- gUCGa-UGCCU--GCGaGUa--GCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 14796 0.66 0.918193
Target:  5'- gGGC-GCGGuguUGUUC-UCGUGCGUGa -3'
miRNA:   3'- gUCGaUGCCu--GCGAGuAGCACGCACg -5'
25516 3' -54.6 NC_005337.1 + 15701 0.66 0.923857
Target:  5'- aCAGCacgACGuGcCGgaCGUCGUGCGaGCg -3'
miRNA:   3'- -GUCGa--UGC-CuGCgaGUAGCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 16141 0.67 0.912284
Target:  5'- aCGGCgacgugACGGACGC--AUCGUGaUGUGa -3'
miRNA:   3'- -GUCGa-----UGCCUGCGagUAGCAC-GCACg -5'
25516 3' -54.6 NC_005337.1 + 20769 0.69 0.831951
Target:  5'- gGGCcGCGGccacGCGCUUcgCGgggacggGCGUGCc -3'
miRNA:   3'- gUCGaUGCC----UGCGAGuaGCa------CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 21793 0.68 0.874756
Target:  5'- -uGCUGCGGGcCGCcuUCGacgcgccgcagcucuUCGUGCGcGCg -3'
miRNA:   3'- guCGAUGCCU-GCG--AGU---------------AGCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 23076 0.68 0.848503
Target:  5'- -cGCgGCGGcCGUgcccggCAUCGUGCGcGCg -3'
miRNA:   3'- guCGaUGCCuGCGa-----GUAGCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 24278 0.67 0.879126
Target:  5'- uCAGCUGgcCGG-CGCUCAcgcagggCGUG-GUGCu -3'
miRNA:   3'- -GUCGAU--GCCuGCGAGUa------GCACgCACG- -5'
25516 3' -54.6 NC_005337.1 + 25298 0.68 0.871797
Target:  5'- aCGGCggGCGGGcCGCgCGUCGaccggcGCGUGUa -3'
miRNA:   3'- -GUCGa-UGCCU-GCGaGUAGCa-----CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 29382 0.69 0.796665
Target:  5'- uCAGCUucgagcacCGGAUGCaCA-CGUGUGUGCc -3'
miRNA:   3'- -GUCGAu-------GCCUGCGaGUaGCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 31075 0.66 0.939369
Target:  5'- gCAGUUgccgacACGGA-GCaugUCGUCGUccaGCGUGCa -3'
miRNA:   3'- -GUCGA------UGCCUgCG---AGUAGCA---CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 31510 0.66 0.934444
Target:  5'- uCAGCacgUGGAUGCUCAcgGUGCagGUGCc -3'
miRNA:   3'- -GUCGau-GCCUGCGAGUagCACG--CACG- -5'
25516 3' -54.6 NC_005337.1 + 33105 0.67 0.905501
Target:  5'- -cGCUGCccuguguGGugGUUCAUCGUGguagGUGUg -3'
miRNA:   3'- guCGAUG-------CCugCGAGUAGCACg---CACG- -5'
25516 3' -54.6 NC_005337.1 + 35120 0.67 0.893099
Target:  5'- gCGGC-GCGGACGCcCA--GUGCG-GCg -3'
miRNA:   3'- -GUCGaUGCCUGCGaGUagCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 35324 0.66 0.918193
Target:  5'- aCGGCgccGCGGAC-C-CAggCGUGCGUGg -3'
miRNA:   3'- -GUCGa--UGCCUGcGaGUa-GCACGCACg -5'
25516 3' -54.6 NC_005337.1 + 36027 0.71 0.699051
Target:  5'- aCGGCgacACGGACugcccgacguGCUCGUCGUGCcaGUcGCg -3'
miRNA:   3'- -GUCGa--UGCCUG----------CGAGUAGCACG--CA-CG- -5'
25516 3' -54.6 NC_005337.1 + 37507 0.66 0.929273
Target:  5'- -uGCUGCGGaaGCGCUCGgacuucUCGUggaugGCG-GCg -3'
miRNA:   3'- guCGAUGCC--UGCGAGU------AGCA-----CGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 39108 0.68 0.848503
Target:  5'- uGGC-GCGGAaGCUCG-CGggcaGCGUGCg -3'
miRNA:   3'- gUCGaUGCCUgCGAGUaGCa---CGCACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.