miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 3' -54.6 NC_005337.1 + 125252 1.1 0.002837
Target:  5'- uCAGCUACGGACGCUCAUCGUGCGUGCc -3'
miRNA:   3'- -GUCGAUGCCUGCGAGUAGCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 110961 0.8 0.272556
Target:  5'- gCAGCUGCGcGGcCGCgucgaCGUCGUGCGUGUu -3'
miRNA:   3'- -GUCGAUGC-CU-GCGa----GUAGCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 42548 0.73 0.595554
Target:  5'- -cGCUGCGGGCGCUgGUgCGgcUGCG-GCu -3'
miRNA:   3'- guCGAUGCCUGCGAgUA-GC--ACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 88217 0.72 0.633956
Target:  5'- cCGGCcuccucgaggagGCGGGCuGCUgcgaagaCGUCGUGCGUGCc -3'
miRNA:   3'- -GUCGa-----------UGCCUG-CGA-------GUAGCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 99904 0.72 0.657842
Target:  5'- uGGCUcgccGCGGcgGCGCUCcUCGUGC-UGCu -3'
miRNA:   3'- gUCGA----UGCC--UGCGAGuAGCACGcACG- -5'
25516 3' -54.6 NC_005337.1 + 63899 0.71 0.678525
Target:  5'- gCAGUacuucUACGGACGCgacCA-CGUGCGgcgGCg -3'
miRNA:   3'- -GUCG-----AUGCCUGCGa--GUaGCACGCa--CG- -5'
25516 3' -54.6 NC_005337.1 + 47670 0.71 0.678525
Target:  5'- -uGCUGCgaGGGCGCg-AUCGUGCGccUGCg -3'
miRNA:   3'- guCGAUG--CCUGCGagUAGCACGC--ACG- -5'
25516 3' -54.6 NC_005337.1 + 36027 0.71 0.699051
Target:  5'- aCGGCgacACGGACugcccgacguGCUCGUCGUGCcaGUcGCg -3'
miRNA:   3'- -GUCGa--UGCCUG----------CGAGUAGCACG--CA-CG- -5'
25516 3' -54.6 NC_005337.1 + 130688 0.71 0.706184
Target:  5'- -cGCUGgGGGCGCugcucaaguccccgUCcgCGUGCGUGg -3'
miRNA:   3'- guCGAUgCCUGCG--------------AGuaGCACGCACg -5'
25516 3' -54.6 NC_005337.1 + 2483 0.7 0.749183
Target:  5'- gCGGCUAuguuCGGguACGCgcgCAgcagCGUGUGUGCg -3'
miRNA:   3'- -GUCGAU----GCC--UGCGa--GUa---GCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 108843 0.7 0.778067
Target:  5'- aAGCgcGCGGGCGacacgcCGUCGUGCGaGCg -3'
miRNA:   3'- gUCGa-UGCCUGCga----GUAGCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 118931 0.7 0.778067
Target:  5'- aAGCgucgcGCGGGCGCag--CGUGCGUcGCg -3'
miRNA:   3'- gUCGa----UGCCUGCGaguaGCACGCA-CG- -5'
25516 3' -54.6 NC_005337.1 + 89235 0.69 0.787438
Target:  5'- cCAGCuUGCGGAg---CAUCGUGCG-GCa -3'
miRNA:   3'- -GUCG-AUGCCUgcgaGUAGCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 29382 0.69 0.796665
Target:  5'- uCAGCUucgagcacCGGAUGCaCA-CGUGUGUGCc -3'
miRNA:   3'- -GUCGAu-------GCCUGCGaGUaGCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 104179 0.69 0.805738
Target:  5'- aAGgUGCGcGCGCUCAcCGUGCGcgaGCg -3'
miRNA:   3'- gUCgAUGCcUGCGAGUaGCACGCa--CG- -5'
25516 3' -54.6 NC_005337.1 + 68556 0.69 0.805738
Target:  5'- aCGGCgcCGGGCGCgccccaCcgCGUGCG-GCu -3'
miRNA:   3'- -GUCGauGCCUGCGa-----GuaGCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 118787 0.69 0.82339
Target:  5'- cCGGCgGCGG-CGC-CGUCGUGcCGcGCg -3'
miRNA:   3'- -GUCGaUGCCuGCGaGUAGCAC-GCaCG- -5'
25516 3' -54.6 NC_005337.1 + 101225 0.69 0.82339
Target:  5'- aGGUcGCGGAgGCgUCcgCGcGCGUGCu -3'
miRNA:   3'- gUCGaUGCCUgCG-AGuaGCaCGCACG- -5'
25516 3' -54.6 NC_005337.1 + 105341 0.69 0.82339
Target:  5'- gCGGCgGCGGGagGCUCccGUCGaucGCGUGCu -3'
miRNA:   3'- -GUCGaUGCCUg-CGAG--UAGCa--CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 20769 0.69 0.831951
Target:  5'- gGGCcGCGGccacGCGCUUcgCGgggacggGCGUGCc -3'
miRNA:   3'- gUCGaUGCC----UGCGAGuaGCa------CGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.