Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25516 | 3' | -54.6 | NC_005337.1 | + | 75620 | 0.66 | 0.923857 |
Target: 5'- gAGCUugGcGCGCgUGUCccGCGUGCg -3' miRNA: 3'- gUCGAugCcUGCGaGUAGcaCGCACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 123597 | 0.66 | 0.939369 |
Target: 5'- gAGCUGCGGccgcacgugccGCGCUCG-CG-G-GUGCu -3' miRNA: 3'- gUCGAUGCC-----------UGCGAGUaGCaCgCACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 47678 | 0.66 | 0.939369 |
Target: 5'- -uGCUgGCGGGCG-UCcgCGUGCGguacgacgGCg -3' miRNA: 3'- guCGA-UGCCUGCgAGuaGCACGCa-------CG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 14796 | 0.66 | 0.918193 |
Target: 5'- gGGC-GCGGuguUGUUC-UCGUGCGUGa -3' miRNA: 3'- gUCGaUGCCu--GCGAGuAGCACGCACg -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 35324 | 0.66 | 0.918193 |
Target: 5'- aCGGCgccGCGGAC-C-CAggCGUGCGUGg -3' miRNA: 3'- -GUCGa--UGCCUGcGaGUa-GCACGCACg -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 56112 | 0.66 | 0.929273 |
Target: 5'- -uGCU-CGaGGCGCacggCAUCGccaGCGUGCg -3' miRNA: 3'- guCGAuGC-CUGCGa---GUAGCa--CGCACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 67697 | 0.66 | 0.929273 |
Target: 5'- gGGUUGCGGAgGUacuUCAUCGUcuucucgggccGCGgGCg -3' miRNA: 3'- gUCGAUGCCUgCG---AGUAGCA-----------CGCaCG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 104190 | 0.66 | 0.934444 |
Target: 5'- gAGCUGgaGGACGCcugCAccugcgcccgacUCGUGUGUGa -3' miRNA: 3'- gUCGAUg-CCUGCGa--GU------------AGCACGCACg -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 131548 | 0.66 | 0.939369 |
Target: 5'- -cGCUaccgGCGGACG-UCGUCGcGCucGUGCu -3' miRNA: 3'- guCGA----UGCCUGCgAGUAGCaCG--CACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 31075 | 0.66 | 0.939369 |
Target: 5'- gCAGUUgccgacACGGA-GCaugUCGUCGUccaGCGUGCa -3' miRNA: 3'- -GUCGA------UGCCUgCG---AGUAGCA---CGCACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 67961 | 0.66 | 0.934444 |
Target: 5'- cCAGCccgcgaccGCGG-CGCUCAcgcgguccagggUCGgcGCGUGCg -3' miRNA: 3'- -GUCGa-------UGCCuGCGAGU------------AGCa-CGCACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 123114 | 0.66 | 0.934444 |
Target: 5'- uGGC-ACGGcgaGCaCGUCGUGCG-GCg -3' miRNA: 3'- gUCGaUGCCug-CGaGUAGCACGCaCG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 128471 | 0.66 | 0.923857 |
Target: 5'- cCGGC-GCGGGagaccgcgUGCUCG-CGgGCGUGCg -3' miRNA: 3'- -GUCGaUGCCU--------GCGAGUaGCaCGCACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 15701 | 0.66 | 0.923857 |
Target: 5'- aCAGCacgACGuGcCGgaCGUCGUGCGaGCg -3' miRNA: 3'- -GUCGa--UGC-CuGCgaGUAGCACGCaCG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 61370 | 0.66 | 0.928743 |
Target: 5'- gAGCgucuucGCGGACuggaagaGCUcCGUCGcggagGCGUGCa -3' miRNA: 3'- gUCGa-----UGCCUG-------CGA-GUAGCa----CGCACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 42734 | 0.66 | 0.934444 |
Target: 5'- uGGCcACGGcCGCgccgagCGUGCgGUGCg -3' miRNA: 3'- gUCGaUGCCuGCGagua--GCACG-CACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 99668 | 0.66 | 0.934444 |
Target: 5'- gCGGCU--GGGCGCgcc-CGUgGCGUGCg -3' miRNA: 3'- -GUCGAugCCUGCGaguaGCA-CGCACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 10440 | 0.66 | 0.934444 |
Target: 5'- -uGCgcgGCGGuGCGCgCGUCGUGCGc-- -3' miRNA: 3'- guCGa--UGCC-UGCGaGUAGCACGCacg -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 37507 | 0.66 | 0.929273 |
Target: 5'- -uGCUGCGGaaGCGCUCGgacuucUCGUggaugGCG-GCg -3' miRNA: 3'- guCGAUGCC--UGCGAGU------AGCA-----CGCaCG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 62010 | 0.66 | 0.929273 |
Target: 5'- aCAGCaGCcGcCGCUCGUCGUGgGccaugGCg -3' miRNA: 3'- -GUCGaUGcCuGCGAGUAGCACgCa----CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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