miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 3' -54.6 NC_005337.1 + 64413 0.66 0.934444
Target:  5'- cCAGCaGCGGcCGCUUggCGgccaccaGCGUGUc -3'
miRNA:   3'- -GUCGaUGCCuGCGAGuaGCa------CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 31510 0.66 0.934444
Target:  5'- uCAGCacgUGGAUGCUCAcgGUGCagGUGCc -3'
miRNA:   3'- -GUCGau-GCCUGCGAGUagCACG--CACG- -5'
25516 3' -54.6 NC_005337.1 + 80414 0.66 0.939369
Target:  5'- -uGCUcGCGGuggcguCGCUgGUCGUGCccGCg -3'
miRNA:   3'- guCGA-UGCCu-----GCGAgUAGCACGcaCG- -5'
25516 3' -54.6 NC_005337.1 + 84395 0.66 0.939369
Target:  5'- gAGCUGCuacAUGgaCAUCGUGCG-GCu -3'
miRNA:   3'- gUCGAUGcc-UGCgaGUAGCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 117580 0.66 0.939369
Target:  5'- cCGGCaGCGGAgGC-CGcCGUGCGcgagaUGCu -3'
miRNA:   3'- -GUCGaUGCCUgCGaGUaGCACGC-----ACG- -5'
25516 3' -54.6 NC_005337.1 + 131548 0.66 0.939369
Target:  5'- -cGCUaccgGCGGACG-UCGUCGcGCucGUGCu -3'
miRNA:   3'- guCGA----UGCCUGCgAGUAGCaCG--CACG- -5'
25516 3' -54.6 NC_005337.1 + 35120 0.67 0.893099
Target:  5'- gCGGC-GCGGACGCcCA--GUGCG-GCg -3'
miRNA:   3'- -GUCGaUGCCUGCGaGUagCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 39845 0.67 0.899734
Target:  5'- uGGuCUGCGGAgugcugcugcuCGcCUCcgCGUGUGUGUu -3'
miRNA:   3'- gUC-GAUGCCU-----------GC-GAGuaGCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 92387 0.67 0.899734
Target:  5'- uCGGUUuuGGACGCgaCGUCGggGaCGUGCu -3'
miRNA:   3'- -GUCGAugCCUGCGa-GUAGCa-C-GCACG- -5'
25516 3' -54.6 NC_005337.1 + 89820 0.67 0.912284
Target:  5'- uCAGCUcgGCGaGGCGCUCGaCGUccuccgGCG-GCg -3'
miRNA:   3'- -GUCGA--UGC-CUGCGAGUaGCA------CGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 39549 0.67 0.879126
Target:  5'- cCGGCgccccgGCGGGCGCUCGgguacUCGUccuCGUGg -3'
miRNA:   3'- -GUCGa-----UGCCUGCGAGU-----AGCAc--GCACg -5'
25516 3' -54.6 NC_005337.1 + 97941 0.67 0.891063
Target:  5'- -cGC-GCGGACGCUCuaCGUGUucccgaccuccuccGUGCg -3'
miRNA:   3'- guCGaUGCCUGCGAGuaGCACG--------------CACG- -5'
25516 3' -54.6 NC_005337.1 + 57295 0.67 0.899734
Target:  5'- gCGGCUGCGGcgcCGCUC-UCGgaaccGCGcgGCc -3'
miRNA:   3'- -GUCGAUGCCu--GCGAGuAGCa----CGCa-CG- -5'
25516 3' -54.6 NC_005337.1 + 53657 0.67 0.90613
Target:  5'- -cGCcACGcGCGCUUcgCG-GCGUGCu -3'
miRNA:   3'- guCGaUGCcUGCGAGuaGCaCGCACG- -5'
25516 3' -54.6 NC_005337.1 + 24278 0.67 0.879126
Target:  5'- uCAGCUGgcCGG-CGCUCAcgcagggCGUG-GUGCu -3'
miRNA:   3'- -GUCGAU--GCCuGCGAGUa------GCACgCACG- -5'
25516 3' -54.6 NC_005337.1 + 132619 0.67 0.886229
Target:  5'- gCGGCgGCGGccaaGCUCGUCGccGCGgGCg -3'
miRNA:   3'- -GUCGaUGCCug--CGAGUAGCa-CGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 133135 0.67 0.899734
Target:  5'- -cGCUccccGCGGA-GCUgGUCGcgcGCGUGCu -3'
miRNA:   3'- guCGA----UGCCUgCGAgUAGCa--CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 45798 0.67 0.886229
Target:  5'- aCAGCUuggcgagcGCGGAguucUGCUCcUCGacgGCGUGUu -3'
miRNA:   3'- -GUCGA--------UGCCU----GCGAGuAGCa--CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 16141 0.67 0.912284
Target:  5'- aCGGCgacgugACGGACGC--AUCGUGaUGUGa -3'
miRNA:   3'- -GUCGa-----UGCCUGCGagUAGCAC-GCACg -5'
25516 3' -54.6 NC_005337.1 + 33105 0.67 0.905501
Target:  5'- -cGCUGCccuguguGGugGUUCAUCGUGguagGUGUg -3'
miRNA:   3'- guCGAUG-------CCugCGAGUAGCACg---CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.