miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 3' -54.6 NC_005337.1 + 133135 0.67 0.899734
Target:  5'- -cGCUccccGCGGA-GCUgGUCGcgcGCGUGCu -3'
miRNA:   3'- guCGA----UGCCUgCGAgUAGCa--CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 133129 0.68 0.864246
Target:  5'- gAGCUgugauccccGCGGA-GCUgGUCGcgcGCGUGCu -3'
miRNA:   3'- gUCGA---------UGCCUgCGAgUAGCa--CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 132619 0.67 0.886229
Target:  5'- gCGGCgGCGGccaaGCUCGUCGccGCGgGCg -3'
miRNA:   3'- -GUCGaUGCCug--CGAGUAGCa-CGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 131548 0.66 0.939369
Target:  5'- -cGCUaccgGCGGACG-UCGUCGcGCucGUGCu -3'
miRNA:   3'- guCGA----UGCCUGCgAGUAGCaCG--CACG- -5'
25516 3' -54.6 NC_005337.1 + 130688 0.71 0.706184
Target:  5'- -cGCUGgGGGCGCugcucaaguccccgUCcgCGUGCGUGg -3'
miRNA:   3'- guCGAUgCCUGCG--------------AGuaGCACGCACg -5'
25516 3' -54.6 NC_005337.1 + 128471 0.66 0.923857
Target:  5'- cCGGC-GCGGGagaccgcgUGCUCG-CGgGCGUGCg -3'
miRNA:   3'- -GUCGaUGCCU--------GCGAGUaGCaCGCACG- -5'
25516 3' -54.6 NC_005337.1 + 125252 1.1 0.002837
Target:  5'- uCAGCUACGGACGCUCAUCGUGCGUGCc -3'
miRNA:   3'- -GUCGAUGCCUGCGAGUAGCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 123597 0.66 0.939369
Target:  5'- gAGCUGCGGccgcacgugccGCGCUCG-CG-G-GUGCu -3'
miRNA:   3'- gUCGAUGCC-----------UGCGAGUaGCaCgCACG- -5'
25516 3' -54.6 NC_005337.1 + 123114 0.66 0.934444
Target:  5'- uGGC-ACGGcgaGCaCGUCGUGCG-GCg -3'
miRNA:   3'- gUCGaUGCCug-CGaGUAGCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 122358 0.68 0.856479
Target:  5'- gGGUgccgcauCGGACGCcacgcgCAU-GUGCGUGCg -3'
miRNA:   3'- gUCGau-----GCCUGCGa-----GUAgCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 118931 0.7 0.778067
Target:  5'- aAGCgucgcGCGGGCGCag--CGUGCGUcGCg -3'
miRNA:   3'- gUCGa----UGCCUGCGaguaGCACGCA-CG- -5'
25516 3' -54.6 NC_005337.1 + 118787 0.69 0.82339
Target:  5'- cCGGCgGCGG-CGC-CGUCGUGcCGcGCg -3'
miRNA:   3'- -GUCGaUGCCuGCGaGUAGCAC-GCaCG- -5'
25516 3' -54.6 NC_005337.1 + 117580 0.66 0.939369
Target:  5'- cCGGCaGCGGAgGC-CGcCGUGCGcgagaUGCu -3'
miRNA:   3'- -GUCGaUGCCUgCGaGUaGCACGC-----ACG- -5'
25516 3' -54.6 NC_005337.1 + 110961 0.8 0.272556
Target:  5'- gCAGCUGCGcGGcCGCgucgaCGUCGUGCGUGUu -3'
miRNA:   3'- -GUCGAUGC-CU-GCGa----GUAGCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 110500 0.68 0.856479
Target:  5'- cCAGCUcgACGuGGCGCUCGcgCGUG-GUGa -3'
miRNA:   3'- -GUCGA--UGC-CUGCGAGUa-GCACgCACg -5'
25516 3' -54.6 NC_005337.1 + 108843 0.7 0.778067
Target:  5'- aAGCgcGCGGGCGacacgcCGUCGUGCGaGCg -3'
miRNA:   3'- gUCGa-UGCCUGCga----GUAGCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 105341 0.69 0.82339
Target:  5'- gCGGCgGCGGGagGCUCccGUCGaucGCGUGCu -3'
miRNA:   3'- -GUCGaUGCCUg-CGAG--UAGCa--CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 104309 0.68 0.840325
Target:  5'- gGGCgcgGCGG-CGCUC----UGCGUGCg -3'
miRNA:   3'- gUCGa--UGCCuGCGAGuagcACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 104190 0.66 0.934444
Target:  5'- gAGCUGgaGGACGCcugCAccugcgcccgacUCGUGUGUGa -3'
miRNA:   3'- gUCGAUg-CCUGCGa--GU------------AGCACGCACg -5'
25516 3' -54.6 NC_005337.1 + 104179 0.69 0.805738
Target:  5'- aAGgUGCGcGCGCUCAcCGUGCGcgaGCg -3'
miRNA:   3'- gUCgAUGCcUGCGAGUaGCACGCa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.